From 9deca172a7bac49ebf4a96f5263b8b4e60680bbb Mon Sep 17 00:00:00 2001 From: "41898282+github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 17 Oct 2024 18:05:20 +0000 Subject: [PATCH] Deployed c601d81 to dev with MkDocs 1.6.1 and mike 2.1.3 --- dev/404.html | 2 +- dev/CHANGELOG/index.html | 2 +- ...e.525ec568.min.js => bundle.83f73b43.min.js} | 4 ++-- ...68.min.js.map => bundle.83f73b43.min.js.map} | 6 +++--- dev/assets/stylesheets/main.0253249f.min.css | 1 + .../stylesheets/main.0253249f.min.css.map | 1 + dev/assets/stylesheets/main.8c3ca2c6.min.css | 1 - .../stylesheets/main.8c3ca2c6.min.css.map | 1 - dev/contributing/index.html | 4 ++-- dev/flowchart/index.html | 2 +- dev/index.html | 4 ++-- dev/platforms/index.html | 4 ++-- dev/references/index.html | 4 ++-- dev/search/search_index.json | 2 +- dev/sitemap.xml.gz | Bin 127 -> 127 bytes dev/tutorial/index.html | 4 ++-- 16 files changed, 21 insertions(+), 21 deletions(-) rename dev/assets/javascripts/{bundle.525ec568.min.js => bundle.83f73b43.min.js} (99%) rename dev/assets/javascripts/{bundle.525ec568.min.js.map => bundle.83f73b43.min.js.map} (99%) create mode 100644 dev/assets/stylesheets/main.0253249f.min.css create mode 100644 dev/assets/stylesheets/main.0253249f.min.css.map delete mode 100644 dev/assets/stylesheets/main.8c3ca2c6.min.css delete mode 100644 dev/assets/stylesheets/main.8c3ca2c6.min.css.map diff --git a/dev/404.html b/dev/404.html index ea94839..a58328e 100644 --- a/dev/404.html +++ b/dev/404.html @@ -1 +1 @@ -
TEMPDIR
in the config file sets the temporary directory location for rules that require transient storage.--singcache
argument to provide a singularity cache dir location. The singularity cache dir is automatically set inside /data/$USER/
or $WORKDIR/
if --singcache
is not provided.Significant upgrades since the last release:
cutadapt_min_length to cutadapt rule... setting it to 15 in config (for miRNAs, Biot and short viral features)
run_clear
is now set to True (as default)circ_quant
replaces clear_quant
in the CLEAR rule. In order words, we are reusing the STAR alignment file and the circExplorer2 output file for running CLEAR. No need to run HISAT2 and TopHat (fusion-search with Bowtie1). This is much quicker.WORKDIR
can now be a relative pathrun_circrna_daq.sh
) added for local and cluster execution.envmodules
used in Snakemake in place of module load
statementsTEMPDIR
in the config file sets the temporary directory location for rules that require transient storage.--singcache
argument to provide a singularity cache dir location. The singularity cache dir is automatically set inside /data/$USER/
or $WORKDIR/
if --singcache
is not provided.Significant upgrades since the last release:
cutadapt_min_length to cutadapt rule... setting it to 15 in config (for miRNAs, Biot and short viral features)
run_clear
is now set to True (as default)circ_quant
replaces clear_quant
in the CLEAR rule. In order words, we are reusing the STAR alignment file and the circExplorer2 output file for running CLEAR. No need to run HISAT2 and TopHat (fusion-search with Bowtie1). This is much quicker.WORKDIR
can now be a relative pathrun_circrna_daq.sh
) added for local and cluster execution.envmodules
used in Snakemake in place of module load
statements