From 584748baa413831ba18e04eb896b805fa166ac71 Mon Sep 17 00:00:00 2001 From: kopardev Date: Thu, 18 Mar 2021 18:16:55 -0400 Subject: [PATCH] adding tab files to rule all --- circRNADetection.snakefile | 1 + 1 file changed, 1 insertion(+) diff --git a/circRNADetection.snakefile b/circRNADetection.snakefile index 751c348..23f98af 100644 --- a/circRNADetection.snakefile +++ b/circRNADetection.snakefile @@ -139,6 +139,7 @@ rule all: ## star2p expand(join(WORKDIR,"results","{sample}","STAR2p","{sample}_p2.Chimeric.out.junction"),sample=SAMPLES), expand(join(WORKDIR,"results","{sample}","STAR2p","{sample}_p2.Aligned.sortedByCoord.out.bam"),sample=SAMPLES), + expand(join(WORKDIR,"results","{sample}","STAR2p","{sample}_p2.ReadsPerGene.out.tab"),sample=SAMPLES), ## star gene counts matrix join(WORKDIR,"results","stranded_STAR_GeneCounts.tsv"), ## picard MarkDuplicates metrics