From 09f8bae3df40f944e2495bf3fe0ae0bde5341204 Mon Sep 17 00:00:00 2001
From: Kelly Sovacool <kelly.sovacool@nih.gov>
Date: Thu, 2 May 2024 15:47:59 -0400
Subject: [PATCH] ci: attempt to install DCC 0.5.0 & python 3.5 via docker

---
 docker/dcc/Dockerfile      | 10 +++++-----
 docker/dcc/environment.yml |  6 ++++++
 2 files changed, 11 insertions(+), 5 deletions(-)
 create mode 100644 docker/dcc/environment.yml

diff --git a/docker/dcc/Dockerfile b/docker/dcc/Dockerfile
index 73a7528..461441c 100644
--- a/docker/dcc/Dockerfile
+++ b/docker/dcc/Dockerfile
@@ -9,11 +9,11 @@ ARG REPONAME="000000"
 ENV REPONAME=${REPONAME}
 
 # install DCC
-ENV DCC_VERSION=0.5.0
-RUN wget https://github.com/dieterich-lab/DCC/archive/refs/tags/v${DCC_VERSION}.tar.gz -O dcc.tar.gz && \
-    tar -xzvf dcc.tar.gz && \
-    cd DCC-${DCC_VERSION} && \
-    python setup.py install
+COPY environment.yml /data2/
+ENV CONDA_ENV=dcc
+RUN mamba env create -n ${CONDA_ENV} -f /data2/environment.yml && \
+    echo "conda activate ${CONDA_ENV}" > ~/.bashrc
+ENV PATH="/opt2/conda/envs/${CONDA_ENV}/bin:$PATH"
 RUN which DCC && DCC -h
 
 # Save Dockerfile in the docker
diff --git a/docker/dcc/environment.yml b/docker/dcc/environment.yml
new file mode 100644
index 0000000..c91b065
--- /dev/null
+++ b/docker/dcc/environment.yml
@@ -0,0 +1,6 @@
+channels:
+    - conda-forge
+    - bioconda
+dependencies:
+    - python=3.5
+    - bioconda::dcc=0.5.0
\ No newline at end of file