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Spike-in Normalization support #148

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kopardev opened this issue Nov 15, 2023 · 2 comments

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kopardev commented Nov 15, 2023

Description of the bug

Check out Hsien-Chao's snakemake version for this --> https://github.com/CCRGeneticsBranch/khanlab_pipeline/blob/master/pipeline.chipseq.rules
Erica can provide real-world sample datasets for testing.
some background reading --> https://www.activemotif.com/catalog/1091/chip-normalization

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kopardev added the bug label

kopardev assigned kelly-sovacool

kopardev added enhancement and removed bug labels

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slsevilla commented Mar 1, 2024

going to test this pipeline: https://github.com/bioinfo-pf-curie/ChIP-seq

If it works i'll work on adding this as an option

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kelly-sovacool commented Aug 23, 2024

@phoman14 we're tracking spike-in support here, feel free to subscribe to this issue if you want to be notified of updates

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