From 49eb54c7bd38483f26ae5b2f7a674b8a6ab0f22f Mon Sep 17 00:00:00 2001
From: slsevilla <slsevilla@gmail.com>
Date: Mon, 26 Feb 2024 11:42:41 -0500
Subject: [PATCH] fix #191

---
 subworkflows/local/input_check.nf | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/subworkflows/local/input_check.nf b/subworkflows/local/input_check.nf
index 36602633..70c8b4fc 100644
--- a/subworkflows/local/input_check.nf
+++ b/subworkflows/local/input_check.nf
@@ -33,12 +33,6 @@ def create_fastq_channel(LinkedHashMap row, String seq_center) {
     meta.antibody        = row.antibody
     meta.control         = row.control
 
-    def read_group = "\'@RG\\tID:${meta.id}\\tSM:${meta.id.split('_')[0..-2].join('_')}\\tPL:ILLUMINA\\tLB:${meta.id}\\tPU:1\'"
-    if (seq_center) {
-        read_group = "\'@RG\\tID:${meta.id}\\tSM:${meta.id.split('_')[0..-2].join('_')}\\tPL:ILLUMINA\\tLB:${meta.id}\\tPU:1\\tCN:${seq_center}\'"
-    }
-    meta.read_group = read_group
-
     // add path(s) of the fastq file(s) to the meta map
     def fastq_meta = []
     if (!file(row.fastq_1).exists()) {