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DESEQ2 error when only 1 sample/group - test sample issue #109

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slsevilla opened this issue Jan 9, 2024 · 0 comments · Fixed by #110
Closed

DESEQ2 error when only 1 sample/group - test sample issue #109

slsevilla opened this issue Jan 9, 2024 · 0 comments · Fixed by #110
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2024-01

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Describe the bug
When using the tinytestrun sampleset, DESEQ2 errors out because there is only one sample per group. Need to handle this error by checking the N samples within each group. If N equals 1 then create dummy files so that the test set will still go to completion. Will require editing the diff.smk file, rules DESEQ and diffbb.
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version 2.4.1 updates CCBR/CARLISLE
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