From d4c783eb5b55501fa5846c6720e92c7b70ff7f21 Mon Sep 17 00:00:00 2001 From: slsevilla Date: Fri, 29 Sep 2023 07:50:51 -0400 Subject: [PATCH] fix: add in args --- .github/workflows/test_dev.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/workflows/test_dev.yml b/.github/workflows/test_dev.yml index a9c653d..cf0d1e7 100644 --- a/.github/workflows/test_dev.yml +++ b/.github/workflows/test_dev.yml @@ -11,6 +11,7 @@ jobs: - uses: docker://snakemake/snakemake:v7.19.1 with: directory: '.test' + args: '--cores 1 --use-conda --conda-cleanup-pkgs cache' - name: Dev Testing Workflow continue-on-error: true run: | @@ -23,4 +24,4 @@ jobs: touch hg38.fa genes.gtf hg38.bed hg38.tss.bed hg38_refseq.ucsc Ecoli_GCF_000005845.2_ASM584v2_genomic.fna adapters.fa && \ snakemake --lint -s /opt2/workflow/Snakefile \ -d /opt2/output_carlisle --configfile /opt2/.test/config_lint.yaml || \ - echo 'There may have been a few warnings or errors. Please read through the log to determine if its harmless.'" \ No newline at end of file + echo 'There may have been a few warnings or errors. Please read through the log to determine if its harmless.'"