From aa81f97e11a36450c9d4a86c43a792b81a6bb551 Mon Sep 17 00:00:00 2001 From: slsevilla Date: Thu, 15 Feb 2024 00:21:20 -0500 Subject: [PATCH] chore: update R to 4.3.2 --- workflow/scripts/_carlisle_functions.R | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/scripts/_carlisle_functions.R b/workflow/scripts/_carlisle_functions.R index a9ee52e..3d6b479 100644 --- a/workflow/scripts/_carlisle_functions.R +++ b/workflow/scripts/_carlisle_functions.R @@ -1,7 +1,7 @@ ######################################################################## # LIBRARY ######################################################################## -carlisle_handle_packages<-function(pkg_df){ +CARLISLE_HANDLE_PACKAGES<-function(pkg_df){ for (rowid in rownames(pkg_df)){ pkg=pkg_df[rowid,"package"] source=pkg_df[rowid,"source"] @@ -13,7 +13,7 @@ carlisle_handle_packages<-function(pkg_df){ print(paste0("Installing: ", pkg)) if (source=="bc") BiocManager::install(pkg,ask=FALSE,update=FALSE) if (source=="cr") install.packages(pkg,version=version,repos = "http://cran.us.r-project.org", - local = FALSE,ask=FALSE,update=FALSE) + local = FALSE,ask=FALSE,update=FALSE,dependencies=TRUE) if (source=="gh") remotes::install_github(gh_name,version=version,local = FALSE,update=FALSE) }