diff --git a/profile/README.md b/profile/README.md index 6e7135a..704df62 100644 --- a/profile/README.md +++ b/profile/README.md @@ -75,11 +75,13 @@ Here is a list of our prominent pipelines and their release schedule on BIOWULF: | WESSeq2 | [XAVIER](https://github.com/CCBR/XAVIER)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | July 21th 2023 | Sep 1st 2023 | | ATACSeq3 | [ASPEN](https://github.com/CCBR/ASPEN)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | November 30th 2023 | TBD | | ChIPSeq4 | [CHAMPAGNE](https://github.com/CCBR/CHAMPAGNE)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | October 15th 2023 | TBD | -| CRISPRSeq5 | [CRUISE](https://github.com/CCBR/CRUISE)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | October 31st 2023 | TBD | +| CRISPRSeq5 | [CRISPIN](https://github.com/CCBR/CRISPIN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | September 31st 2023 | TBD | | CUT&RunSeq6 | [CARLISLE](https://github.com/CCBR/CARLISLE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | October 31st 2023 | TBD | -| circRNASeq7 | [CHARLIE](https://github.com/CCBR/CHARLIE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | March 31st 2024 | TBD | -| scRNASeq8 | [SINCLAIR](https://github.com/CCBR/SINCLAIR)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | April 30th 2024 | TBD | -| WGSSeq9 | [LOGAN](https://github.com/CCBR/LOGAN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | May 31st 2024 | TBD | +| EV-Seq10 | [ESCAPE](https://github.com/CCBR/ESCAPE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | March 26th, 2024 | TBD | +| circRNASeq7 | [CHARLIE](https://github.com/CCBR/CHARLIE)![snakemake](https://raw.githubusercontent.com/CCBR/.github/main/img/snakemake-small-v2.svg) | _Jul 31st 2024_ | TBD | +| scRNASeq8 | [SINCLAIR](https://github.com/CCBR/SINCLAIR)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | _Sep 30th 2024_ | TBD | +| WGSSeq9 | [LOGAN](https://github.com/CCBR/LOGAN)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | _Sep 30th 2024_ | TBD | +| spatialSeq11 | [SPENCER](https://github.com/CCBR/SPENCER)![nextflow](https://raw.githubusercontent.com/CCBR/.github/main/img/nextflow-small-v2.svg) | TBD | TBD | * CLI = Command Line Interface * GUI = Graphical User Interface @@ -100,7 +102,11 @@ Here is a list of our prominent pipelines and their release schedule on BIOWULF: **8** SINCLAIR=_SINgle CelL AnalysIs Resource_ addresses various single cell modalities... eg. single-cell expression, CITESeq, TCR-Seq, etc. - **9** WGSSeq pipeline will soon be CCBR's newest offering. + **9** LOGAN=_whoLe genOme-sequencinG Analysis pipeliNe_ will soon be CCBR's newest offering. + + **10** ESCAPE=_Extracellular veSiCles rnAseq PipelinE_. + + **11** SPENCER=_SPatial seqeENCing Resource_. For any other datatype or pipeline, please [email :mailbox:](mailto:ccbr_pipeliner@mail.nih.gov) us directly to get the conversation started!