sync-forks.yml

name: Sync Forks

on:
  schedule:
    - cron: "47 11 * * *" # once every day
  push:
    paths:
      - .github/workflows/sync-forks.yml
  workflow_dispatch:

permissions:
  contents: write

env:
  # Token must be created by someone with write access for all forks.
  # Be sure to 'configure SSO' from the token creation page for each fork organization.
  GH_TOKEN: ${{ secrets.SYNC_FORK_TOKEN }}
  UPSTREAM_OWNER: CCBR

jobs:
  sync-from-CCBR:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        FORK_OWNER: [NCIPangea, abcsFrederick]
        REPO: [ASPEN, CARLISLE, CHAMPAGNE, CRUISE, RENEE, XAVIER]
        include:
          - REPO: ASCENT
            FORK_OWNER: abcsFrederick
          - REPO: CCBR_circRNA_AmpliconSeq
            FORK_OWNER: abcsFrederick
          - REPO: CCBR_NextflowTemplate
            FORK_OWNER: abcsFrederick
          - REPO: CCBR_SnakemakeTemplate
            FORK_OWNER: abcsFrederick
          - REPO: DNAnexus
            FORK_OWNER: abcsFrederick
          - REPO: DOCKERS
            FORK_OWNER: abcsFrederick
          - REPO: HapFerret
            FORK_OWNER: abcsFrederick
          - REPO: HERVx
            FORK_OWNER: abcsFrederick
          - REPO: l2p
            FORK_OWNER: abcsFrederick
          - REPO: METRO
            FORK_OWNER: abcsFrederick
          - REPO: MAAPSTER
            FORK_OWNER: abcsFrederick
          - REPO: permfix
            FORK_OWNER: abcsFrederick
          - REPO: pyrkit
            FORK_OWNER: abcsFrederick
          - REPO: rNA
            FORK_OWNER: abcsFrederick
          - REPO: SINCLAIR
            FORK_OWNER: abcsFrederick
          - REPO: spacesavers2
            FORK_OWNER: abcsFrederick
          - REPO: TRANQUIL
            FORK_OWNER: abcsFrederick
          - REPO: MAPLE
            FORK_OWNER: abcsFrederick
          - REPO: LOGAN
            FORK_OWNER: abcsFrederick

    steps:
      - name: sync forked repos
        run: |
          gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source $UPSTREAM_OWNER/${{ matrix.REPO }} --force

  sync-to-nidap:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        FORK_OWNER: [NIDAP-Community]
        REPO:
          - CPTR-9-Weigert-DSP-Analysis
          - CPTR_5_DSP_Krug
          - CPTR_6_DSP_Annunziata
          - CPTR-12-Wang-DSP-Analysis
          - CPTR-11-Beck-Canine-OsteoSarcoma-DSP-Analysis
          - CPTR-10-Tosato-Mouse-WTA-DSP-Analysis
          - DSP_Analysis

    steps:
      - name: sync forked repos
        run: |
          gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source $UPSTREAM_OWNER/${{ matrix.REPO }} --force

  sync-misc:
    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
        include:
          - REPO: Oncogenomics_NF_WF
            UPSTREAM_OWNER: CCRGeneticsBranch
            FORK_OWNER: abcsFrederick
          - REPO: fruitsc
            UPSTREAM_OWNER: NCI-CCR-POB
            FORK_OWNER: abcsFrederick
          - REPO: POB_snMultiome_pipeline
            UPSTREAM_OWNER: NCI-CCDI
            FORK_OWNER: abcsFrederick
    steps:
      - name: sync forked repos
        run: |
          gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source ${{matrix.UPSTREAM_OWNER}}/${{ matrix.REPO }} --force