Sync Forks #359
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| name: Sync Forks | |
| on: | |
| schedule: | |
| - cron: "47 11 * * *" # once every day | |
| push: | |
| paths: | |
| - .github/workflows/sync-forks.yml | |
| workflow_dispatch: | |
| permissions: | |
| contents: write | |
| env: | |
| # Token must be created by someone with write access for all forks. | |
| # Be sure to 'configure SSO' from the token creation page for each fork organization. | |
| GH_TOKEN: ${{ secrets.SYNC_FORK_TOKEN }} | |
| UPSTREAM_OWNER: CCBR | |
| jobs: | |
| sync-from-CCBR: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| FORK_OWNER: [NCIPangea, abcsFrederick] | |
| REPO: [ASPEN, CARLISLE, CHAMPAGNE, CRUISE, RENEE, XAVIER] | |
| include: | |
| - REPO: ASCENT | |
| FORK_OWNER: abcsFrederick | |
| - REPO: CCBR_circRNA_AmpliconSeq | |
| FORK_OWNER: abcsFrederick | |
| - REPO: CCBR_NextflowTemplate | |
| FORK_OWNER: abcsFrederick | |
| - REPO: CCBR_SnakemakeTemplate | |
| FORK_OWNER: abcsFrederick | |
| - REPO: DNAnexus | |
| FORK_OWNER: abcsFrederick | |
| - REPO: DOCKERS | |
| FORK_OWNER: abcsFrederick | |
| - REPO: HapFerret | |
| FORK_OWNER: abcsFrederick | |
| - REPO: HERVx | |
| FORK_OWNER: abcsFrederick | |
| - REPO: l2p | |
| FORK_OWNER: abcsFrederick | |
| - REPO: METRO | |
| FORK_OWNER: abcsFrederick | |
| - REPO: MAAPSTER | |
| FORK_OWNER: abcsFrederick | |
| - REPO: permfix | |
| FORK_OWNER: abcsFrederick | |
| - REPO: pyrkit | |
| FORK_OWNER: abcsFrederick | |
| - REPO: rNA | |
| FORK_OWNER: abcsFrederick | |
| - REPO: SINCLAIR | |
| FORK_OWNER: abcsFrederick | |
| - REPO: spacesavers2 | |
| FORK_OWNER: abcsFrederick | |
| - REPO: TRANQUIL | |
| FORK_OWNER: abcsFrederick | |
| - REPO: MAPLE | |
| FORK_OWNER: abcsFrederick | |
| - REPO: LOGAN | |
| FORK_OWNER: abcsFrederick | |
| steps: | |
| - name: sync forked repos | |
| run: | | |
| gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source $UPSTREAM_OWNER/${{ matrix.REPO }} --force | |
| sync-to-nidap: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| FORK_OWNER: [NIDAP-Community] | |
| REPO: | |
| - CPTR-9-Weigert-DSP-Analysis | |
| - CPTR_5_DSP_Krug | |
| - CPTR_6_DSP_Annunziata | |
| - CPTR-12-Wang-DSP-Analysis | |
| - CPTR-11-Beck-Canine-OsteoSarcoma-DSP-Analysis | |
| - CPTR-10-Tosato-Mouse-WTA-DSP-Analysis | |
| - DSP_Analysis | |
| steps: | |
| - name: sync forked repos | |
| run: | | |
| gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source $UPSTREAM_OWNER/${{ matrix.REPO }} --force | |
| sync-misc: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - REPO: Oncogenomics_NF_WF | |
| UPSTREAM_OWNER: CCRGeneticsBranch | |
| FORK_OWNER: abcsFrederick | |
| - REPO: fruitsc | |
| UPSTREAM_OWNER: NCI-CCR-POB | |
| FORK_OWNER: abcsFrederick | |
| - REPO: POB_snMultiome_pipeline | |
| UPSTREAM_OWNER: NCI-CCDI | |
| FORK_OWNER: abcsFrederick | |
| steps: | |
| - name: sync forked repos | |
| run: | | |
| gh repo sync ${{ matrix.FORK_OWNER }}/${{ matrix.REPO }} --source ${{matrix.UPSTREAM_OWNER}}/${{ matrix.REPO }} --force |