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Valentina0925 #438

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8a912c6
COTC022 and TCL01
ValentinaEp Oct 1, 2024
2f7b749
UC01
ValentinaEp Nov 4, 2024
1138a51
updates
ValentinaEp Nov 4, 2024
b81cff6
Update PythonReader.groovy
ValentinaEp Nov 5, 2024
2dee83b
Update Canine_PopUp_Continue_Btn.rs
ValentinaEp Nov 5, 2024
0a82786
Update Script1727269605401.groovy
ValentinaEp Nov 5, 2024
aaa359e
Update Script1727269605380.groovy
ValentinaEp Nov 5, 2024
f97eddf
Update Script1727269605380.groovy
ValentinaEp Nov 5, 2024
02f8eb1
Update ICDC_test.ts
ValentinaEp Nov 5, 2024
db6ae47
small changes
ValentinaEp Nov 5, 2024
a51dc33
Update Script1727269605380.groovy
ValentinaEp Nov 5, 2024
21503b3
Update CustomBrowserDriver.groovy
ValentinaEp Nov 6, 2024
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5 changes: 2 additions & 3 deletions Commons_Automation.prj
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Expand Up @@ -7,10 +7,9 @@
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<freeLicense>false</freeLicense>
<migratedVersion>5.9.0</migratedVersion>
<modifiedEdition>ENTERPRISE</modifiedEdition>
<modifiedVersion>9.5.0</modifiedVersion>
<modifiedVersion>9.3.1</modifiedVersion>
<pageLoadTimeout>0</pageLoadTimeout>
<projectFileLocation>/Users/sohilz2/Automation/poc-07-15-2024/Commons_Automation/Commons_Automation.prj</projectFileLocation>
<projectFileLocation>C:\Users\epishinavv\git\Commons_Automation\Commons_Automation.prj</projectFileLocation>
<sourceContent>
<sourceFolderList>
<sourceFolderConfiguration>
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368 changes: 184 additions & 184 deletions InputFiles/ICDC/COTC022/2024-08-19/COTC022-data_files.tsv
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10 changes: 5 additions & 5 deletions InputFiles/ICDC/COTC022/2024-08-19/COTC022-demographic.tsv
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Expand Up @@ -20,7 +20,7 @@ demographic COTC022-0302 COTC022-0302 Labrador Retriever 12.1 Male Yes 34
demographic COTC022-0304 COTC022-0304 Labrador Retriever 6.5 Male Yes 42.6
demographic COTC022-0306 COTC022-0306 Australian Shepherd 12.4 Male Yes 29.5
demographic COTC022-0308 COTC022-0308 Labrador Retriever 9.4 Female Yes 30.8
demographic COTC022-0310 COTC022-0310 German Shorthaired Pointer 10.3 Male Yes 35.4
demographic COTC022-0310 COTC022-0310 Shorthaired Pointer 10.3 Male Yes 35.4
demographic COTC022-0312 COTC022-0312 Greyhound 7 Male Yes 35.3
demographic COTC022-0318 COTC022-0318 Labrador Retriever 9.1 Male Yes 46.1
demographic COTC022-0331 COTC022-0331 Rottweiler 10.1 Male Yes 48
Expand Down Expand Up @@ -69,9 +69,9 @@ demographic COTC022-0702 COTC022-0702 Labrador Retriever 9.5 Male Yes 33.2
demographic COTC022-0704 COTC022-0704 Bulldog 8.7 Female Yes 29.8
demographic COTC022-0706 COTC022-0706 Catahoula Hound 9.3 Male Yes 40
demographic COTC022-0708 COTC022-0708 Labrador Retriever 11 Male Yes 36.4
demographic COTC022-0710 COTC022-0710 Mixed Breed 10 Male Yes 39.6 Labradoodle
demographic COTC022-0710 COTC022-0710 Labradoodle 10 Male Yes 39.6 Labradoodle
demographic COTC022-0712 COTC022-0712 Rottweiler 9.2 Male Yes 53.2
demographic COTC022-0716 COTC022-0716 Mixed Breed 7.8 Male Yes 40.3 Goldendoodle
demographic COTC022-0716 COTC022-0716 Goldendoodle 7.8 Male Yes 40.3 Goldendoodle
demographic COTC022-0718 COTC022-0718 Mixed Breed 9.3 Female Yes 28.8
demographic COTC022-0719 COTC022-0719 Rhodesian Ridgeback 6.3 Female Yes 44
demographic COTC022-0720 COTC022-0720 Labrador Retriever 6 Male Yes 34.8
Expand All @@ -93,7 +93,7 @@ demographic COTC022-0907 COTC022-0907 Mastiff 5 Male Yes 94.5
demographic COTC022-0909 COTC022-0909 Cane Corso 5.7 Male Yes 77.5
demographic COTC022-0910 COTC022-0910 Mixed Breed 10.7 Female Yes 42.2
demographic COTC022-1002 COTC022-1002 Mastiff 9.3 Female Yes 45
demographic COTC022-1004 COTC022-1004 Mixed Breed 4.1 Female Yes 27.7 Pit Bull Terrier
demographic COTC022-1004 COTC022-1004 Pit Bull Terrier 4.1 Female Yes 27.7 Pit Bull Terrier
demographic COTC022-1006 COTC022-1006 Rottweiler 8.3 Male Yes 47.4
demographic COTC022-1008 COTC022-1008 Labrador Retriever 8.1 Female Yes 26.5
demographic COTC022-1010 COTC022-1010 Labrador Retriever 12.3 Female Yes 41.3
Expand Down Expand Up @@ -131,7 +131,7 @@ demographic COTC022-1916 COTC022-1916 Other 9 Female Yes 45.9
demographic COTC022-2002 COTC022-2002 Mixed Breed 8.3 Female Yes 36
demographic COTC022-2004 COTC022-2004 Labrador Retriever 5.5 Female Yes 43
demographic COTC022-2005 COTC022-2005 Saint Bernard 5.3 Female Yes 52
demographic COTC022-2006 COTC022-2006 Bulldog Female Yes 30.3
demographic COTC022-2006 COTC022-2006 Old English Bulldog 9 Female Yes 30.3
demographic COTC022-2008 COTC022-2008 Mixed Breed 11 Male Yes 30
demographic COTC022-2010 COTC022-2010 Chow Chow 5 Male Yes 29
demographic COTC022-2011 COTC022-2011 Boxer 10.8 Female Yes 38
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314 changes: 157 additions & 157 deletions InputFiles/ICDC/COTC022/2024-08-19/COTC022-sample.tsv
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155 changes: 155 additions & 0 deletions InputFiles/ICDC/GLIOMA01/2024-08-23/icdc_dropbox_glioma01_case_level_vcf_20210919_neo4j.tsv
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61 changes: 61 additions & 0 deletions InputFiles/ICDC/NCATS-COP01/2019-12-01/NCATS-COP01-blood_samples.txt
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type case.case_id sample_id sample_type general_sample_pathology analysis_area analysis_area_percentage_tumor analysis_area_percentage_stroma analysis_area_percentage_glass analysis_area_percentage_pigmented_tumor total_tissue_area tumor_tissue_area non_tumor_tissue_area percentage_tumor percentage_stroma comment necropsy_sample date_of_sample_collection
sample NCATS-COP01CCB010015 CCB010015 0311 blood not applicable No 2007-07-13
sample NCATS-COP01CCB010031 CCB010031 0311 blood not applicable No 2007-10-01
sample NCATS-COP01CCB010045 CCB010045 0311 blood not applicable No 2008-01-03
sample NCATS-COP01CCB010072 CCB010072 0311 blood not applicable No 2008-05-27
sample NCATS-COP01CCB010091 CCB010091 0311 blood not applicable No 2008-07-23
sample NCATS-COP01CCB010093 CCB010093 0311 blood not applicable No 2008-07-28
sample NCATS-COP01CCB010178 CCB010178 0311 blood not applicable No 2009-04-27
sample NCATS-COP01CCB010208 CCB010208 0311 blood not applicable No 2009-07-23
sample NCATS-COP01CCB010233 CCB010233 0311 blood not applicable No 2010-02-11
sample NCATS-COP01CCB010234 CCB010234 0311 blood not applicable No 2010-02-15
sample NCATS-COP01CCB010235 CCB010235 0311 blood not applicable No 2010-02-16
sample NCATS-COP01CCB010243 CCB010243 0311 blood not applicable No 2010-04-19
sample NCATS-COP01CCB010285 CCB010285 0311 blood not applicable No 2010-11-22
sample NCATS-COP01CCB010311 CCB010311 0311 blood not applicable No 2011-03-14
sample NCATS-COP01CCB010378 CCB010378 0311 blood not applicable No 2012-06-05
sample NCATS-COP01CCB020018 CCB020018 0300 blood not applicable No 2007-11-02
sample NCATS-COP01CCB020026 CCB020026 0311 blood not applicable No 2008-02-20
sample NCATS-COP01CCB020027 CCB020027 0311 blood not applicable No 2008-02-25
sample NCATS-COP01CCB020031 CCB020031 0312 blood not applicable No 2008-04-11
sample NCATS-COP01CCB020035 CCB020035 0311 blood not applicable No 2008-06-23
sample NCATS-COP01CCB020036 CCB020036 0311 blood not applicable No 2008-07-01
sample NCATS-COP01CCB020054 CCB020054 0311 blood not applicable No 2008-09-12
sample NCATS-COP01CCB020128 CCB020128 0313 blood not applicable No 2009-06-25
sample NCATS-COP01CCB030001 CCB030001 0312 blood not applicable No 2007-05-21
sample NCATS-COP01CCB030003 CCB030003 0312 blood not applicable No 2007-06-06
sample NCATS-COP01CCB030026 CCB030026 0312 blood not applicable No 2007-09-18
sample NCATS-COP01CCB030035 CCB030035 0311 blood not applicable No 2007-11-09
sample NCATS-COP01CCB030064 CCB030064 0311 blood not applicable No 2008-03-21
sample NCATS-COP01CCB030077 CCB030077 0311 blood not applicable No 2008-05-09
sample NCATS-COP01CCB030078 CCB030078 0311 blood not applicable No 2008-05-09
sample NCATS-COP01CCB030156 CCB030156 0311 blood not applicable No 2009-05-05
sample NCATS-COP01CCB030162 CCB030162 0311 blood not applicable No 2009-06-01
sample NCATS-COP01CCB030227 CCB030227 0312 blood not applicable No 2010-01-21
sample NCATS-COP01CCB030255 CCB030255 0311 blood not applicable No 2010-04-14
sample NCATS-COP01CCB030258 CCB030258 0311 blood not applicable No 2010-04-28
sample NCATS-COP01CCB030300 CCB030300 0311 blood not applicable No 2010-10-07
sample NCATS-COP01CCB040184 CCB040184 0311 blood not applicable Yes 2009-10-06
sample NCATS-COP01CCB040254 CCB040254 0311 blood not applicable Yes 2010-03-01
sample NCATS-COP01CCB040382 CCB040382 0311 blood not applicable No 2011-01-20
sample NCATS-COP01CCB050004 CCB050004 0311 blood not applicable No 2008-05-14
sample NCATS-COP01CCB050022 CCB050022 0311 blood not applicable No 2008-08-06
sample NCATS-COP01CCB050096 CCB050096 0312 blood not applicable No 2009-06-09
sample NCATS-COP01CCB050170 CCB050170 0312 blood not applicable No 2010-01-25
sample NCATS-COP01CCB050177 CCB050177 0311 blood not applicable No 2010-02-24
sample NCATS-COP01CCB050216 CCB050216 0311 blood not applicable No 2010-07-08
sample NCATS-COP01CCB050227 CCB050227 0311 blood not applicable No 2010-07-23
sample NCATS-COP01CCB050297 CCB050297 0311 blood not applicable No 2011-02-17
sample NCATS-COP01CCB050327 CCB050327 0311 blood not applicable No 2011-09-01
sample NCATS-COP01CCB060030 CCB060030 0312 blood not applicable No 2008-12-16
sample NCATS-COP01CCB060034 CCB060034 0311 blood not applicable No 2009-01-09
sample NCATS-COP01CCB060039 CCB060039 0313 blood not applicable No 2009-02-04
sample NCATS-COP01CCB060051 CCB060051 0311 blood not applicable No 2009-04-24
sample NCATS-COP01CCB070003 CCB070003 0311 blood not applicable No 2008-05-09
sample NCATS-COP01CCB070007 CCB070007 0311 blood not applicable No 2008-06-03
sample NCATS-COP01CCB070013 CCB070013 0311 blood not applicable No 2008-03-28
sample NCATS-COP01CCB070020 CCB070020 0311 blood not applicable No 2008-07-10
sample NCATS-COP01CCB070034 CCB070034 0311 blood not applicable No 2008-08-13
sample NCATS-COP01CCB070102 CCB070102 0311 blood not applicable No 2009-06-12
sample NCATS-COP01CCB080012 CCB080012 0312 blood not applicable No 2009-03-06
sample NCATS-COP01CCB080018 CCB080018 0312 blood not applicable No 2009-04-30
61 changes: 61 additions & 0 deletions InputFiles/ICDC/NCATS-COP01/2019-12-01/NCATS-COP01-case.txt
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type study.clinical_study_designation cohort.cohort_description case_id patient_id
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010015 CCB010015
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB010031 CCB010031
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB010045 CCB010045
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB010072 CCB010072
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB010091 CCB010091
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB010093 CCB010093
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010178 CCB010178
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010208 CCB010208
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB010233 CCB010233
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010234 CCB010234
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010235 CCB010235
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB010243 CCB010243
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB010285 CCB010285
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB010311 CCB010311
case NCATS-COP01 Melanoma NCATS-COP01CCB010378 CCB010378
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB020018 CCB020018
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB020026 CCB020026
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB020027 CCB020027
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB020031 CCB020031
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB020035 CCB020035
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB020036 CCB020036
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB020054 CCB020054
case NCATS-COP01 Melanoma NCATS-COP01CCB020128 CCB020128
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB030001 CCB030001
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB030003 CCB030003
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB030026 CCB030026
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB030035 CCB030035
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB030064 CCB030064
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB030077 CCB030077
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB030078 CCB030078
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB030156 CCB030156
case NCATS-COP01 Melanoma NCATS-COP01CCB030162 CCB030162
case NCATS-COP01 Melanoma NCATS-COP01CCB030227 CCB030227
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB030255 CCB030255
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB030258 CCB030258
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB030300 CCB030300
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB040184 CCB040184
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB040254 CCB040254
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB040382 CCB040382
case NCATS-COP01 B Cell Lymphoma NCATS-COP01CCB050004 CCB050004
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB050022 CCB050022
case NCATS-COP01 Melanoma NCATS-COP01CCB050096 CCB050096
case NCATS-COP01 Melanoma NCATS-COP01CCB050170 CCB050170
case NCATS-COP01 Melanoma NCATS-COP01CCB050177 CCB050177
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB050216 CCB050216
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB050227 CCB050227
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB050297 CCB050297
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB050327 CCB050327
case NCATS-COP01 Melanoma NCATS-COP01CCB060030 CCB060030
case NCATS-COP01 T Cell Lymphoma NCATS-COP01CCB060034 CCB060034
case NCATS-COP01 Melanoma NCATS-COP01CCB060039 CCB060039
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB060051 CCB060051
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB070003 CCB070003
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB070007 CCB070007
case NCATS-COP01 Osteosarcoma NCATS-COP01CCB070013 CCB070013
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB070020 CCB070020
case NCATS-COP01 Pulmonary Neoplasms NCATS-COP01CCB070034 CCB070034
case NCATS-COP01 Melanoma NCATS-COP01CCB070102 CCB070102
case NCATS-COP01 Melanoma NCATS-COP01CCB080012 CCB080012
case NCATS-COP01 Melanoma NCATS-COP01CCB080018 CCB080018
61 changes: 61 additions & 0 deletions InputFiles/ICDC/NCATS-COP01/2019-12-01/NCATS-COP01-demographic.txt
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type case.case_id patient_age_at_enrollment breed sex neutered_indicator weight
demographic NCATS-COP01CCB010015 12 Other Male Yes 38
demographic NCATS-COP01CCB010031 8 Other Male Yes 31
demographic NCATS-COP01CCB010045 5 Beagle Female Yes 12
demographic NCATS-COP01CCB010072 10 Akita Female Yes 31.8
demographic NCATS-COP01CCB010091 9 Labrador Retriever Female Yes 28
demographic NCATS-COP01CCB010093 7 Mixed Breed Male Yes 49.8
demographic NCATS-COP01CCB010178 7 Staffordshire Bull Terrier Male Yes 37.2
demographic NCATS-COP01CCB010208 3 Vizsla Female Yes 22.4
demographic NCATS-COP01CCB010233 6 Golden Retriever Male Yes 38
demographic NCATS-COP01CCB010234 7 Mixed Breed Male Yes 30
demographic NCATS-COP01CCB010235 8 Mixed Breed Female Yes 35.5
demographic NCATS-COP01CCB010243 7 Golden Retriever Female Yes 25
demographic NCATS-COP01CCB010285 10 Doberman Pinscher Female Yes 28
demographic NCATS-COP01CCB010311 10 Mixed Breed Female Yes 22.3
demographic NCATS-COP01CCB010378 12 Mixed Breed Female Yes 27.5
demographic NCATS-COP01CCB020018 12 Mixed Breed Male Yes 18.8
demographic NCATS-COP01CCB020026 7 Greyhound Male Yes 37.5
demographic NCATS-COP01CCB020027 7 German Shepherd Dog Female Yes 35
demographic NCATS-COP01CCB020031 8 Bernese Mountain Dog Male No 44.8
demographic NCATS-COP01CCB020035 9 Labrador Retriever Female Yes 32
demographic NCATS-COP01CCB020036 10 Black and Tan Coonhound Female Yes 34.1
demographic NCATS-COP01CCB020054 7 Labrador Retriever Male Yes 37.1
demographic NCATS-COP01CCB020128 10 Miniature Schnauzer Female Yes 4
demographic NCATS-COP01CCB030001 5 Labrador Retriever Female Yes 36
demographic NCATS-COP01CCB030003 6 Golden Retriever Male Yes 39
demographic NCATS-COP01CCB030026 9 Golden Retriever Male Yes 42
demographic NCATS-COP01CCB030035 8 Saint Bernard Female Yes 62
demographic NCATS-COP01CCB030064 8 Labrador Retriever Female Yes 30
demographic NCATS-COP01CCB030077 10 Golden Retriever Male Yes 33
demographic NCATS-COP01CCB030078 9 Golden Retriever Male Yes 37
demographic NCATS-COP01CCB030156 4 Golden Retriever Male Yes 40
demographic NCATS-COP01CCB030162 12 Mixed Breed Female Yes 30
demographic NCATS-COP01CCB030227 13 Golden Retriever Male Yes 37
demographic NCATS-COP01CCB030255 7 Mixed Breed Female Yes 13
demographic NCATS-COP01CCB030258 9 Golden Retriever Male Yes 32.6
demographic NCATS-COP01CCB030300 9 Golden Retriever Male Yes 33.8
demographic NCATS-COP01CCB040184 4 Boxer Male Yes 39.1
demographic NCATS-COP01CCB040254 13 American Staffordshire Terrier Female Yes 27.3
demographic NCATS-COP01CCB040382 10 Gordon Setter Female Yes 32
demographic NCATS-COP01CCB050004 13 Bouvier des Flandres Female Yes 29.4
demographic NCATS-COP01CCB050022 10 Greyhound Male Yes 29.4
demographic NCATS-COP01CCB050096 8 Labrador Retriever Male Yes 35.8
demographic NCATS-COP01CCB050170 10 German Shepherd Dog Male Yes 46.1
demographic NCATS-COP01CCB050177 13 Rottweiler Female Yes 31.6
demographic NCATS-COP01CCB050216 13 Mixed Breed Male Yes 23.7
demographic NCATS-COP01CCB050227 11 Labrador Retriever Female Yes 36.5
demographic NCATS-COP01CCB050297 10 Australian Shepherd Female Yes 21.5
demographic NCATS-COP01CCB050327 8 Doberman Pinscher Male Yes 43
demographic NCATS-COP01CCB060030 12 Giant Schnauzer Female Yes 31.2
demographic NCATS-COP01CCB060034 4 Boxer Female Yes 29
demographic NCATS-COP01CCB060039 10 Cocker Spaniel Male Yes 15
demographic NCATS-COP01CCB060051 13 Weimaraner Female Yes 28
demographic NCATS-COP01CCB070003 12 German Shorthaired Pointer Female Yes 35.2
demographic NCATS-COP01CCB070007 6 West Highland White Terrier Male Yes 7.3
demographic NCATS-COP01CCB070013 11 Rottweiler Male Yes 35
demographic NCATS-COP01CCB070020 13 Golden Retriever Female Yes 34
demographic NCATS-COP01CCB070034 9 Saint Bernard Female Yes 63.9
demographic NCATS-COP01CCB070102 12 Mixed Breed Female Yes 3.9
demographic NCATS-COP01CCB080012 9 Chinese Shar-Pei Female Yes 20.5
demographic NCATS-COP01CCB080018 9 Doberman Pinscher Female Yes 43.2
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