diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index d59db9b..d079ebf 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -530,7 +530,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Resting state functional magnetic resonance image data set true @@ -544,7 +543,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Task-based functional magnetic resonance image data set true @@ -3705,6 +3703,8 @@ The values often belong to a group of pixels or voxels that share the same chara Usually T2* sequence with same TE value throughout. https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" + https://orcid.org/0009-0004-2155-902X + fMRI acquisition sequence NCIT:C17958 SCTID:241603006 functional MRI acquisition sequence @@ -5069,11 +5069,347 @@ The values often belong to a group of pixels or voxels that share the same chara - + + + A scalar measurement datum recording the vascular space occupancy (VASO) signal, which reflects changes in cerebral blood volume by using changes in the MRI signal associated with variations in blood volume within the brain. + + 2024-07-26T16:28:29Z + VASO signal + vascular space occupancy signal + + + + + + + + + A scalar measurement datum recording the arterial spin labeling (ASL) signal, which reflects cerebral blood flow by using magnetically labeled arterial blood water as an endogenous tracer. + + 2024-07-26T16:29:12Z + ASL signal + arterial spin labeling signal + + + + + + + + + A measurement datum recording the blood oxygen level dependent (BOLD) signal, which reflects changes in deoxyhemoglobin driven by localized changes in brain blood flow and blood oxygenation. + + 2024-07-26T16:29:26Z + BOLD signal + blood oxygenation level dependent signal + + + + + + + + + A protocol that specifies the parameters and procedures for conducting functional magnetic resonance imaging (fMRI) to measure brain activity and connectivity. + + 2024-07-26T17:19:33Z + fMRI sequence protocol + functional magnetic resonance imaging sequence protocol + + + + + + + + + + + + + + + + + + + + + + + + + + + + A data item that is a representation of brain regions that exhibit statistically significant changes in neural activity in response to an experimental task or stimuli. + + 2024-07-26T17:30:23Z + activation map + + + + + + + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a blood oxygenation level dependent (BOLD) functional magnetic resonance image data set. + + 2024-07-26T18:09:23Z + production of activation map based on a BOLD functional magnetic resonance image data set + production of activation map based on a blood oxygenation level dependent functional magnetic resonance image data set + + + + + + + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a vascular space occupancy (VASO) functional magnetic resonance image data set. + + 2024-07-26T18:10:45Z + production of activation map based on a VASO functional magnetic resonance image data set + production of activation map based on a vascular space occupancy functional magnetic resonance image data set + + + + + + + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a arterial spin labeling (ASL) functional magnetic resonance image data set. + + 2024-07-26T18:12:34Z + production of activation map based on a ASL functional magnetic resonance image data set + production of activation map based on a arterial spin labeling functional magnetic resonance image data set + + + + + + + + + + + + + + + + + + + + + + + + + + + + An activation map derived from a blood oxygenation level dependent (BOLD) functional magnetic resonance image data set. + + 2024-07-26T18:16:22Z + BOLD activation map + blood oxygenation level dependent activation map + + + + + + + + + + + + + + + + + + + + + + + + + + + + An activation map derived from a vascular space occupancy (VASO) functional magnetic resonance image data set. + + 2024-07-26T18:17:27Z + VASO activation map + vascular space occupancy activation map + + + + + + + + + + + + + + + + + + + + + + + + + + + + An activation map derived from an arterial spin labeling (ASL) functional magnetic resonance image data set. + + 2024-07-26T18:17:37Z + ASL activation map + arterial spin labeling activation map + + + + + + + + + A functional magnetic resonance imaging (fMRI) sequence protocol in which two or more different conditions are alternated in order to determine the differences between the two conditions during the imaging acquisition. + + 2024-07-31T21:37:37Z + block design fMRI sequence protocol + block design functional magnetic resonance imaging sequence protocol + + + + + + + + + A functional magnetic resonance imaging (fMRI) sequence protocol in which the presentation of stimuli is randomized and the time in between stimuli can vary during the imaging acquisition. + + 2024-07-31T21:38:13Z + efMRI sequence protocol + event-related functional magnetic resonance imaging sequence protocol + + + + + + + + + A type of event-related functional magnetic resonance imaging (efMRI) sequence protocol where events occur so rapidly that their hemodynamic responses overlap during the imaging acquisition. + + 2024-07-31T21:38:22Z + rapid efMRI sequence protocol + rapid event-related functional magnetic resonance imaging sequence protocol + + + + + + + + + A type of functional magnetic resonance imaging (fMRI) sequence protocol in which the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + 2024-07-31T21:38:59Z + mixed event-related/block design fMRI sequence protocol + mixed event-mixed event-related/block design functional magnetic resonance imaging sequence protocol + + + + + + + + + + 2024-08-09T22:05:03Z + blood oxygenation level dependent functional magnetic resonance image data set + + + + + + + + + + 2024-08-09T22:04:39Z + vascular space occupancy functional magnetic resonance image data set + + + + + + + + + + 2024-08-09T21:49:49Z + blood oxygenation level dependent functional magnetic resonance image data set + + + + + + + - 2024-07-24T16:37:31Z - arterial spin labeling functional magnetic resonance image data set + 2024-08-09T21:49:33Z + vascular space occupancy functional magnetic resonance image data set diff --git a/src/ontology/imports/obi_import.owl b/src/ontology/imports/obi_import.owl index d897344..ea40935 100644 --- a/src/ontology/imports/obi_import.owl +++ b/src/ontology/imports/obi_import.owl @@ -11,7 +11,7 @@ - 2024-05-29 + 2024-05-29 @@ -4785,40 +4785,6 @@ In regard to the statement that reagents are 'distinct' from the speci - - - - - resting state functional magnetic resonance image data set - An fMRI used for assessing functional connectivity of brain regions at rest. - - A type of functional MRI in which the participant is not given a task, but just rests during acquisision - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - resting state functional magnetic resonance image data set - - - - - - - - - task-based functional magnetic resonance image data set - fMRI type used for assessing brain activity while performing an action or in response to stimuli. - - A type of functional MRI in which the participant is given a task or tasks, which are timed with the acquisition - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - task-based functional magnetic resonance image data set - - - - @@ -10242,5 +10208,5 @@ realizes some 'host of immune response role' - +