From 8d3bda334976aaff7d48299d4b3d668f2abc3892 Mon Sep 17 00:00:00 2001 From: Alexander Terry Date: Thu, 25 Jul 2024 10:10:55 -0400 Subject: [PATCH 1/5] Updated fMRI data set subclasses - Deleted task based fMRI data set, and resting state fMRI data set (they were replaced). - Added fMRI data set subclasses: BOLD fMRI data set, VASO fMRI data set, and ASL image data set. - Added BOLD/VASO/ASL fMRI data set subclasses: resting state BOLD/VASO/ASL fMRI data set, task-based BOLD/VASO/ASL fMRI data set. - Added BOLD/VASO/ASL task-based fMRI data set subclasses: BOLD/VASO/ASL event-related fMRI data set, BOLD/VASO/ASL block design fMRI data set, BOLD/VASO/ASL mixed event-related/block design fMRI data set. - Added BOLD/VASO/ASL event-related fMRI data set subclasses: BOLD/VASO/ASL rapid event-related fMRI data set. - Added defs to each new term. --- src/ontology/MRIO-edit.owl | 243 +++++++++++++++++++++++++++- src/ontology/imports/obi_import.owl | 38 +---- 2 files changed, 243 insertions(+), 38 deletions(-) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index aa0bee6..45dfe7a 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -520,7 +520,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Resting state functional magnetic resonance image data set true @@ -534,7 +533,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Task-based functional magnetic resonance image data set true @@ -4970,10 +4968,59 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + 2024-07-25T03:45:29Z + blood oxygenation level dependant mixed event-related/block design functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + 2024-07-24T23:50:47Z + arterial spin labeling resting state functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + 2024-07-25T13:56:33Z + arterial spin labeling mixed event-related/block design functional magnetic resonance image data set + + + + + + + + + A type of vascular space occupancy event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. + + 2024-07-25T03:26:42Z + vascular space occupancy rapid event-related functional magnetic resonance image data set + + + + + A functional magnetic resonance image data set that utilizes arterial spin labeling. 2024-07-24T16:37:31Z arterial spin labeling functional magnetic resonance image data set @@ -4981,6 +5028,78 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A type of blood oxygenation level dependent event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. + + 2024-07-25T03:29:43Z + blood oxygenation level dependent rapid event-related functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. + + 2024-07-25T13:58:36Z + arterial spin labeling block design functional magnetic resonance image data set + + + + + + + + + A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. + + 2024-07-25T13:59:05Z + vascular space occupancy block design functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. + + 2024-07-25T03:27:23Z + arterial spin labeling event-related functional magnetic resonance image data set + + + + + + + + + A type of blood oxygenation level dependent functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + 2024-07-25T00:11:14Z + blood oxygenation level dependent resting state functional magnetic resonance image data set + + + + + + + + + A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. + + 2024-07-25T03:44:38Z + blood oxygenation level dependant block design functional magnetic resonance image data set + + + + @@ -4991,6 +5110,126 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A type of vascular space occupancy functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. + + 2024-07-25T00:14:44Z + vascular space occupancy task-based functional magnetic resonance image data set + + + + + + + + + A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. + + 2024-07-25T03:29:25Z + blood oxygenation level dependent event-related functional magnetic resonance image data set + + + + + + + + + A type of blood oxygenation level dependent functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. + + 2024-07-25T00:11:54Z + blood oxygenation level dependent task-based functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. + + 2024-07-24T23:53:17Z + arterial spin labeling task-based functional magnetic resonance image data set + + + + + + + + + A functional magnetic resonance image data set that utilizes blood oxygenation level dependent contrast. + + 2024-07-24T23:33:43Z + blood oxygenation level dependent functional magnetic resonance image data set + + + + + + + + + A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + 2024-07-25T13:59:29Z + vascular space occupancy mixed event-related/block design functional magnetic resonance image data set + + + + + + + + + A type of arterial spin labeling event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. + + 2024-07-25T03:28:00Z + arterial spin labeling rapid event-related functional magnetic resonance image data set + + + + + + + + + A functional magnetic resonance image data set that utilizes vascular space occupancy contrast. + + 2024-07-24T23:33:06Z + vascular space occupancy functional magnetic resonance image data set + + + + + + + + + A type of vascular space occupancy functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + 2024-07-25T00:14:36Z + vascular space occupancy resting state functional magnetic resonance image data set + + + + + + + + + A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. + + 2024-07-25T03:25:21Z + vascular space occupancy event-related functional magnetic resonance image data set + + + + diff --git a/src/ontology/imports/obi_import.owl b/src/ontology/imports/obi_import.owl index d897344..ea40935 100644 --- a/src/ontology/imports/obi_import.owl +++ b/src/ontology/imports/obi_import.owl @@ -11,7 +11,7 @@ - 2024-05-29 + 2024-05-29 @@ -4785,40 +4785,6 @@ In regard to the statement that reagents are 'distinct' from the speci - - - - - resting state functional magnetic resonance image data set - An fMRI used for assessing functional connectivity of brain regions at rest. - - A type of functional MRI in which the participant is not given a task, but just rests during acquisision - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - resting state functional magnetic resonance image data set - - - - - - - - - task-based functional magnetic resonance image data set - fMRI type used for assessing brain activity while performing an action or in response to stimuli. - - A type of functional MRI in which the participant is given a task or tasks, which are timed with the acquisition - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - task-based functional magnetic resonance image data set - - - - @@ -10242,5 +10208,5 @@ realizes some 'host of immune response role' - + From b574d622f5ed5427ee76c7fe3eb859fa9e9ea333 Mon Sep 17 00:00:00 2001 From: Alexander Terry Date: Thu, 25 Jul 2024 11:04:28 -0400 Subject: [PATCH 2/5] Added functional MRI acquisition sequence subclasses - BOLD/VASO/ASL fMRI acquisition sequences. - Added ASL fMRI acquisition sequence subclasses: continuous/pulsed/velocity selective/diffusion prepared pseudocontinuous ASL fMRI acquisition sequences. --- src/ontology/MRIO-edit.owl | 84 ++++++++++++++++++++++++++++++++++++++ 1 file changed, 84 insertions(+) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index aa0bee6..d5c2a25 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -4970,6 +4970,30 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A functional MRI acquisition sequence that uses the vascular space occupancy signal to measure cerebral blood volume and detect metabolic activity in the brain. + + 2024-07-25T14:45:57Z + vascular space occupancy functional MRI acquisition sequence + + + + + + + + + A type of arterial spin labeling functional MRI acquisition sequence that utilizes the continuous arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:27:33Z + continuous arterial spin labeling functional MRI acquisition sequence + + + + @@ -4981,6 +5005,30 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A type of arterial spin labeling functional MRI acquisition sequence that utilizes the diffusion prepared pseudocontinuous arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:40:25Z + diffusion prepared pseudocontinuous arterial spin labeling functional MRI acquisition sequence + + + + + + + + + A type of arterial spin labeling functional MRI acquisition sequence that utilizes the pulsed arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:39:45Z + pulsed arterial spin labeling functional MRI acquisition sequence + + + + @@ -4991,6 +5039,42 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + A type of arterial spin labeling functional MRI acquisition sequence that utilizes the velocity selective arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:40:05Z + velocity selective arterial spin labeling functional MRI acquisition sequence + + + + + + + + + A functional MRI acquisition sequence that uses the blood oxygenation level dependent signal to detect metabolic activity in the brain. + + 2024-07-25T14:47:05Z + blood oxygenation level dependent functional MRI acquisition sequence + + + + + + + + + A functional MRI acquisition sequence that uses the arterial spin labeling signal to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:27:03Z + arterial spin labeling functional MRI acquisition sequence + + + + From dbe8ab58fb7fee8f9dc8a3fb5f3220cc16a19e85 Mon Sep 17 00:00:00 2001 From: Alexander Terry Date: Thu, 15 Aug 2024 00:16:18 -0400 Subject: [PATCH 3/5] Updated BOLD/VASO/ASL fMRI data set subclasses Updated BOLD/VASO/ASL fMRI data set subclasses: Deleted BOLD/VASO/ASL mixed/event-related/rapid event-related/block design subclasses. Added synonyms to all fMRI image data set subclasses. modified defs to include acronyms, and assigned ID's within the range (e.g. MRIO_1000000) for each term. --- src/ontology/MRIO-edit.owl | 299 ++++++++++++++++--------------------- 1 file changed, 128 insertions(+), 171 deletions(-) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index 45dfe7a..c0f5e3d 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -365,6 +365,16 @@ + + + + + 2024-08-09T20:33:47Z + cognitive process + + + + @@ -4968,264 +4978,211 @@ The values often belong to a group of pixels or voxels that share the same chara - + - - - A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + - 2024-07-25T03:45:29Z - blood oxygenation level dependant mixed event-related/block design functional magnetic resonance image data set + 2024-08-09T19:59:31Z + arterial spin labeling functional MRI acquisition sequence - + - - - A type of arterial spin labeling functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + - 2024-07-24T23:50:47Z - arterial spin labeling resting state functional magnetic resonance image data set + 2024-08-09T19:59:51Z + vascular space occupancy functional MRI acquisition sequence - + - - - A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + - 2024-07-25T13:56:33Z - arterial spin labeling mixed event-related/block design functional magnetic resonance image data set + 2024-08-09T20:00:10Z + blood oxygenation level dependent functional MRI acquisition sequence - + - - - A type of vascular space occupancy event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. - - 2024-07-25T03:26:42Z - vascular space occupancy rapid event-related functional magnetic resonance image data set - - - - - - - + + + + + + + + + + + + - A functional magnetic resonance image data set that utilizes arterial spin labeling. + A functional magnetic resonance image data set that utilizes arterial spin labeling (ASL). 2024-07-24T16:37:31Z + ASL functional magnetic resonance image data set arterial spin labeling functional magnetic resonance image data set - - - - - A type of blood oxygenation level dependent event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. - - 2024-07-25T03:29:43Z - blood oxygenation level dependent rapid event-related functional magnetic resonance image data set - - - - - + - - - A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. + + + A type of arterial spin labeling (ASL) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition. - 2024-07-25T13:58:36Z - arterial spin labeling block design functional magnetic resonance image data set + 2024-07-24T23:50:47Z + ASL resting state functional magnetic resonance image data set + arterial spin labeling resting state functional magnetic resonance image data set - + - - - A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + A type of arterial spin labeling (ASL) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition. - 2024-07-25T13:59:05Z - vascular space occupancy block design functional magnetic resonance image data set + 2024-07-24T23:53:17Z + ASL task-based functional magnetic resonance image data set + arterial spin labeling task-based functional magnetic resonance image data set - + - - - A type of arterial spin labeling task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. + + + A functional magnetic resonance image data set that utilizes blood oxygenation level dependent (BOLD) contrast. - 2024-07-25T03:27:23Z - arterial spin labeling event-related functional magnetic resonance image data set + 2024-07-24T23:33:43Z + BOLD functional magnetic resonance image data set + blood oxygenation level dependent functional magnetic resonance image data set - + - - - A type of blood oxygenation level dependent functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + + A type of blood oxygenation level dependent (BOLD) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition. 2024-07-25T00:11:14Z + BOLD resting state functional magnetic resonance image data set blood oxygenation level dependent resting state functional magnetic resonance image data set - - - - - A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli in structured blocks seperated by rest periods during the imaging acquisition. - - 2024-07-25T03:44:38Z - blood oxygenation level dependant block design functional magnetic resonance image data set - - - - - - - - - An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. - lateral ventricle segmentation map - - - - - - - - - A type of vascular space occupancy functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. - - 2024-07-25T00:14:44Z - vascular space occupancy task-based functional magnetic resonance image data set - - - - - - - - - A type of blood oxygenation level dependent task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. - - 2024-07-25T03:29:25Z - blood oxygenation level dependent event-related functional magnetic resonance image data set - - - - - + - - - A type of blood oxygenation level dependent functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. + + + A type of blood oxygenation level dependent (BOLD) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition. 2024-07-25T00:11:54Z + BOLD task-based functional magnetic resonance image data set blood oxygenation level dependent task-based functional magnetic resonance image data set - - - - - A type of arterial spin labeling functional magnetic resonance imaging in which the participant is given a task(s), which are timed with the acquisition. - - 2024-07-24T23:53:17Z - arterial spin labeling task-based functional magnetic resonance image data set - - - - - + - + - A functional magnetic resonance image data set that utilizes blood oxygenation level dependent contrast. + A functional magnetic resonance image data set that utilizes vascular space occupancy (VASO) contrast. - 2024-07-24T23:33:43Z - blood oxygenation level dependent functional magnetic resonance image data set - - - - - - - - - A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. - - 2024-07-25T13:59:29Z - vascular space occupancy mixed event-related/block design functional magnetic resonance image data set + 2024-07-24T23:33:06Z + VASO functional magnetic resonance image data set + vascular space occupancy functional magnetic resonance image data set - + - - - A type of arterial spin labeling event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. + + + A type of vascular space occupancy (VASO) functional magnetic resonance imaging (fMRI) in which the participant is not given a task, but just rests during acquisition. - 2024-07-25T03:28:00Z - arterial spin labeling rapid event-related functional magnetic resonance image data set + 2024-07-25T00:14:36Z + VASO resting state functional magnetic resonance image data set + vascular space occupancy resting state functional magnetic resonance image data set - + - - - A functional magnetic resonance image data set that utilizes vascular space occupancy contrast. + + + A type of vascular space occupancy (VASO) functional magnetic resonance imaging (fMRI) in which the participant is given a task(s), which are timed with the acquisition. - 2024-07-24T23:33:06Z - vascular space occupancy functional magnetic resonance image data set + 2024-07-25T00:14:44Z + VASO task-based functional magnetic resonance image data set + vascular space occupancy task-based functional magnetic resonance image data set - + - - - A type of vascular space occupancy functional magnetic resonance imaging in which the participant is not given a task, but just rests during acquisition. + + A type of blood oxygenation level dependent event-related functional magnetic resonance imaging where trials are closely spaced without allowing the hemodynamic response to return to baseline, and the resulting hemodynamic responses are deconvolved afterwards. - 2024-07-25T00:14:36Z - vascular space occupancy resting state functional magnetic resonance image data set + 2024-07-25T03:29:43Z + blood oxygenation level dependent rapid event-related functional magnetic resonance image data set - + - - - A type of vascular space occupancy task-based functional magnetic resonance imaging where the participant is given specific tasks or stimuli that are presented in a randomized or semi-randomized order seperated by rest periods during the imaging acquisition. Typically, after each trial, the hemodynamic response is allowed to return to baseline. - - 2024-07-25T03:25:21Z - vascular space occupancy event-related functional magnetic resonance image data set + + + An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. + lateral ventricle segmentation map From 12454100a79727ac4f65cc5946ec1afd8fcdff69 Mon Sep 17 00:00:00 2001 From: Alexander Terry Date: Thu, 15 Aug 2024 00:18:30 -0400 Subject: [PATCH 4/5] Made updates to existing terms Deleted ASL fMRI data set in order to avoid merge conflict. Term is already added on fMRI-terms-1 branch. Added synonym to fMRI acquisition sequence and added myself as a term editor. Added synonyms to all fMRI acquisition sequence subclasses. modified defs to include acronyms, and assigned ID's within the range (e.g. MRIO_1000000) for each term. --- src/ontology/MRIO-edit.owl | 160 ++++++++++++++++++++++++++----------- 1 file changed, 112 insertions(+), 48 deletions(-) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index d5c2a25..6e9bdf7 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -3695,6 +3695,8 @@ The values often belong to a group of pixels or voxels that share the same chara Usually T2* sequence with same TE value throughout. https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" + https://orcid.org/0009-0004-2155-902X + fMRI acquisition sequence NCIT:C17958 SCTID:241603006 functional MRI acquisition sequence @@ -4970,107 +4972,169 @@ The values often belong to a group of pixels or voxels that share the same chara - + - + + + + + + + + + + + + - A functional MRI acquisition sequence that uses the vascular space occupancy signal to measure cerebral blood volume and detect metabolic activity in the brain. + A functional MRI acquisition sequence that uses the arterial spin labeling signal (ASL) to measure cerebral blood flow and detect metabolic activity in the brain. - 2024-07-25T14:45:57Z - vascular space occupancy functional MRI acquisition sequence + 2024-07-25T14:27:03Z + ASL fMRI acquisition sequence + arterial spin labeling functional MRI acquisition sequence - + - - - A type of arterial spin labeling functional MRI acquisition sequence that utilizes the continuous arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + + A type of arterial spin labeling (ASL) functional MRI acquisition sequence that utilizes the continuous arterial spin labeling (CASL) technique to measure cerebral blood flow and detect metabolic activity in the brain. 2024-07-25T14:27:33Z + CASL fMRI acquisition sequence continuous arterial spin labeling functional MRI acquisition sequence - + - - + + + A type of arterial spin labeling (ASL) functional MRI acquisition sequence that utilizes the pulsed arterial spin labeling (PASL) technique to measure cerebral blood flow and detect metabolic activity in the brain. - 2024-07-24T16:37:31Z - arterial spin labeling functional magnetic resonance image data set + 2024-07-25T14:39:45Z + PASL fMRI acquisition sequence + pulsed arterial spin labeling functional MRI acquisition sequence + + + + + + + + + A type of arterial spin labeling (ASL) functional MRI acquisition sequence that utilizes the velocity selective arterial spin labeling (VSASL) technique to measure cerebral blood flow and detect metabolic activity in the brain. + + 2024-07-25T14:40:05Z + VSASL fMRI acquisition sequence + velocity selective arterial spin labeling functional MRI acquisition sequence - + - - - A type of arterial spin labeling functional MRI acquisition sequence that utilizes the diffusion prepared pseudocontinuous arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + + A type of arterial spin labeling (ASL) functional MRI acquisition sequence that utilizes the diffusion prepared pseudocontinuous arterial spin labeling (DP-pCASL) technique to measure cerebral blood flow and detect metabolic activity in the brain. 2024-07-25T14:40:25Z - diffusion prepared pseudocontinuous arterial spin labeling functional MRI acquisition sequence + DP-pCASL fMRI acquisition sequence + diffusion-prepared pseudocontinuous arterial spin labeling MRI acquisition sequence - + - - - A type of arterial spin labeling functional MRI acquisition sequence that utilizes the pulsed arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + + + + + + + + + + + + + A functional MRI acquisition sequence that uses the vascular space occupancy (VASO) signal to measure cerebral blood volume and detect metabolic activity in the brain. - 2024-07-25T14:39:45Z - pulsed arterial spin labeling functional MRI acquisition sequence + 2024-07-25T14:45:57Z + VASO fMRI acquisition sequence + vascular space occupancy functional MRI acquisition sequence - + - - - An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. - lateral ventricle segmentation map + + + + + + + + + + + + + + A functional MRI acquisition sequence that uses the blood oxygenation level dependent (BOLD) signal to detect metabolic activity in the brain. + + 2024-07-25T14:47:05Z + BOLD fMRI acquisition sequence + blood oxygenation level dependent functional MRI acquisition sequence - + - - - A type of arterial spin labeling functional MRI acquisition sequence that utilizes the velocity selective arterial spin labeling technique to measure cerebral blood flow and detect metabolic activity in the brain. + + - 2024-07-25T14:40:05Z - velocity selective arterial spin labeling functional MRI acquisition sequence + 2024-08-09T22:05:39Z + arterial spin labeling functional magnetic resonance image data set - + - - - A functional MRI acquisition sequence that uses the blood oxygenation level dependent signal to detect metabolic activity in the brain. + + - 2024-07-25T14:47:05Z - blood oxygenation level dependent functional MRI acquisition sequence + 2024-08-09T22:05:03Z + blood oxygenation level dependent functional magnetic resonance image data set - + - - - A functional MRI acquisition sequence that uses the arterial spin labeling signal to measure cerebral blood flow and detect metabolic activity in the brain. + + - 2024-07-25T14:27:03Z - arterial spin labeling functional MRI acquisition sequence + 2024-08-09T22:04:39Z + vascular space occupancy functional magnetic resonance image data set + + + + + + + + + An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. + lateral ventricle segmentation map From 548b7ac33a5503078248de34bb96fc0a094022f2 Mon Sep 17 00:00:00 2001 From: Alex Bartnik Date: Mon, 21 Oct 2024 16:07:47 -0400 Subject: [PATCH 5/5] Updated OBI import --- src/ontology/imports/obi_import.owl | 38 ++--------------------------- 1 file changed, 2 insertions(+), 36 deletions(-) diff --git a/src/ontology/imports/obi_import.owl b/src/ontology/imports/obi_import.owl index d897344..ea40935 100644 --- a/src/ontology/imports/obi_import.owl +++ b/src/ontology/imports/obi_import.owl @@ -11,7 +11,7 @@ - 2024-05-29 + 2024-05-29 @@ -4785,40 +4785,6 @@ In regard to the statement that reagents are 'distinct' from the speci - - - - - resting state functional magnetic resonance image data set - An fMRI used for assessing functional connectivity of brain regions at rest. - - A type of functional MRI in which the participant is not given a task, but just rests during acquisision - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - resting state functional magnetic resonance image data set - - - - - - - - - task-based functional magnetic resonance image data set - fMRI type used for assessing brain activity while performing an action or in response to stimuli. - - A type of functional MRI in which the participant is given a task or tasks, which are timed with the acquisition - https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" - https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" - https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - https://github.com/obi-ontology/obi/issues/1481 - task-based functional magnetic resonance image data set - - - - @@ -10242,5 +10208,5 @@ realizes some 'host of immune response role' - +