From e6cd3b9f12bcd871e906ccd60cdf699abe0d623d Mon Sep 17 00:00:00 2001 From: Alexander Diehl Date: Fri, 31 May 2024 12:32:03 -0400 Subject: [PATCH 1/2] Add Alex Terry as a creator --- src/ontology/MRIO-edit.owl | 151 +++++++++++++++++++++++++++++++++++++ 1 file changed, 151 insertions(+) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index 3150dd0..d76c8a6 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -46,6 +46,7 @@ Mackenzie Smith Michael G. Dwyer William D. Duncan + Alexander Terry An ontology for the representation of MRI acquisition and analysis. MRI Ontology (MRI) https://creativecommons.org/licenses/by/4.0/ @@ -64,6 +65,12 @@ + + + + + + @@ -329,6 +336,12 @@ + + + + + + @@ -5068,12 +5081,138 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + @@ -5518,6 +5657,18 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + + + + + + + + From 3dc02ecd75e38cb85929edbdd99ff89d18268125 Mon Sep 17 00:00:00 2001 From: adbartni Date: Mon, 21 Oct 2024 16:44:11 -0400 Subject: [PATCH 2/2] Added Alex Terry as creater of MRIO --- src/ontology/MRIO-edit.owl | 575 ++++++++++++++++++++++++++++++------- 1 file changed, 470 insertions(+), 105 deletions(-) diff --git a/src/ontology/MRIO-edit.owl b/src/ontology/MRIO-edit.owl index d76c8a6..342c616 100644 --- a/src/ontology/MRIO-edit.owl +++ b/src/ontology/MRIO-edit.owl @@ -36,7 +36,7 @@ - + Alan Ruttenberg Alexander D. Bartnik @@ -45,8 +45,8 @@ Lucas Serra Mackenzie Smith Michael G. Dwyer - William D. Duncan - Alexander Terry + William D. Duncan + Alexander Terry An ontology for the representation of MRI acquisition and analysis. MRI Ontology (MRI) https://creativecommons.org/licenses/by/4.0/ @@ -65,15 +65,15 @@ - + - + - + - + @@ -336,12 +336,6 @@ - - - - - - @@ -372,6 +366,16 @@ + + + + + 2024-07-30T23:59:27Z + cognitive process + + + + @@ -527,7 +531,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Resting state functional magnetic resonance image data set true @@ -541,7 +544,6 @@ https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" https://orcid.org/0000-0002-2104-0568 "Lucas M. Serra" - obsolete Task-based functional magnetic resonance image data set true @@ -3702,6 +3704,8 @@ The values often belong to a group of pixels or voxels that share the same chara Usually T2* sequence with same TE value throughout. https://orcid.org/0000-0001-9676-7377 "Alexander D. Bartnik" https://orcid.org/0000-0001-9990-8331 "Alexander D. Diehl" + https://orcid.org/0009-0004-2155-902X + fMRI acquisition sequence NCIT:C17958 SCTID:241603006 functional MRI acquisition sequence @@ -4977,239 +4981,547 @@ The values often belong to a group of pixels or voxels that share the same chara - + - - - An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. - lateral ventricle segmentation map + + + A measure function that models the temporal changes in brain blood flow and oxygenation in response to neural activity. + + 2024-07-31T17:26:45Z + HRF + hemodynamic response function - + - + + + A standard model of the hemodynamic response function (HRF) that represents the typical temporal changes in brain blood flow and oxygenation in response to neural activity, used as a reference in neuroimaging studies to interpret brain activation patterns. + + 2024-07-31T17:27:39Z + canonical HRF + canonical hemodynamic response function + - + - + + + A volume unit in a three-dimensional imaging system that represents a discrete cubic or rectangular portion of space. + + 2024-07-31T17:38:57Z + voxel + - + - + + + A specific voxel selected as a starting point for examining or analyzing three-dimensional data. + + 2024-07-31T17:39:07Z + seed voxel + - + - + + + A three-dimensional spatial region defined by a cluster of contiguous voxels used as the starting point for examining or analyzing three-dimensional data. + + 2024-07-31T17:41:46Z + seed region + - + - + + + An image data set in which all images are acquired or aligned within the same plane of reference. + + 2024-07-31T18:08:58Z + coplaner image data set + - + - + + + Blood circulation that is increased in the brain, in response to neural activity. + + 2024-08-05T20:00:54Z + HR + hemodynamic response + - + - - NCIT:C16809 - SCTID:113091000 + + + A scalar measurement datum recording the vascular space occupancy (VASO) signal, which reflects changes in cerebral blood volume by using changes in the MRI signal associated with variations in blood volume within the brain. + + 2024-07-26T16:28:29Z + VASO signal + vascular space occupancy signal - + - + + + A scalar measurement datum recording the arterial spin labeling (ASL) signal, which reflects cerebral blood flow by using magnetically labeled arterial blood water as an endogenous tracer. + + 2024-07-26T16:29:12Z + ASL signal + arterial spin labeling signal + - + - + + + A measurement datum recording the blood oxygen level dependent (BOLD) signal, which reflects changes in deoxyhemoglobin driven by localized changes in brain blood flow and blood oxygenation. + + 2024-07-26T16:29:26Z + BOLD signal + blood oxygenation level dependent signal + - + - + + + A protocol that specifies the parameters and procedures for conducting functional magnetic resonance imaging (fMRI) to measure brain activity and connectivity. + + 2024-07-26T17:19:33Z + fMRI sequence protocol + functional magnetic resonance imaging sequence protocol + - + - - - - - - - + + + + + + + + + + + + + + + + + + + + + + A data item that is a representation of brain regions that exhibit statistically significant changes in neural activity in response to an experimental task or stimuli. + + 2024-07-26T17:30:23Z + activation map - + - + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a blood oxygenation level dependent (BOLD) functional magnetic resonance image data set. + + 2024-07-26T18:09:23Z + production of activation map based on a BOLD functional magnetic resonance image data set + production of activation map based on a blood oxygenation level dependent functional magnetic resonance image data set + - + - + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a vascular space occupancy (VASO) functional magnetic resonance image data set. + + 2024-07-26T18:10:45Z + production of activation map based on a VASO functional magnetic resonance image data set + production of activation map based on a vascular space occupancy functional magnetic resonance image data set + - + - + + + + + + + + + + + + + + A functional mapping that produces an activation map that is based on a arterial spin labeling (ASL) functional magnetic resonance image data set. + + 2024-07-26T18:12:34Z + production of activation map based on a ASL functional magnetic resonance image data set + production of activation map based on a arterial spin labeling functional magnetic resonance image data set + - + - + + + + + + + + + + + + + + + + + + + + + + An activation map derived from a blood oxygenation level dependent (BOLD) functional magnetic resonance image data set. + + 2024-07-26T18:16:22Z + BOLD activation map + blood oxygenation level dependent activation map + - + - + + + + + + + + + + + + + + + + + + + + + + An activation map derived from a vascular space occupancy (VASO) functional magnetic resonance image data set. + + 2024-07-26T18:17:27Z + VASO activation map + vascular space occupancy activation map + - + - + + + + + + + + + + + + + + + + + + + + + + An activation map derived from an arterial spin labeling (ASL) functional magnetic resonance image data set. + + 2024-07-26T18:17:37Z + ASL activation map + arterial spin labeling activation map + - + - + + + A functional magnetic resonance imaging (fMRI) sequence protocol in which two or more different conditions are alternated in order to determine the differences between the two conditions during the imaging acquisition. + + 2024-07-31T21:37:37Z + block design fMRI sequence protocol + block design functional magnetic resonance imaging sequence protocol + - + - + + + A functional magnetic resonance imaging (fMRI) sequence protocol in which the presentation of stimuli is randomized and the time in between stimuli can vary during the imaging acquisition. + + 2024-07-31T21:38:13Z + efMRI sequence protocol + event-related functional magnetic resonance imaging sequence protocol + - + - + + + A type of event-related functional magnetic resonance imaging (efMRI) sequence protocol where events occur so rapidly that their hemodynamic responses overlap during the imaging acquisition. + + 2024-07-31T21:38:22Z + rapid efMRI sequence protocol + rapid event-related functional magnetic resonance imaging sequence protocol + - + - + + + A type of functional magnetic resonance imaging (fMRI) sequence protocol in which the participant is given specific tasks or stimuli that alternate between structured blocks and randomized or semi-randomized order seperated by rest periods during the imaging acquisition. + + 2024-07-31T21:38:59Z + mixed event-related/block design fMRI sequence protocol + mixed event-mixed event-related/block design functional magnetic resonance imaging sequence protocol + - + - + + + + 2024-08-09T22:05:03Z + blood oxygenation level dependent functional magnetic resonance image data set + - + - + + + + 2024-08-09T22:04:39Z + vascular space occupancy functional magnetic resonance image data set + - + - + + + + 2024-08-09T21:49:49Z + blood oxygenation level dependent functional magnetic resonance image data set + - + - + + + + 2024-08-09T21:49:33Z + vascular space occupancy functional magnetic resonance image data set + - + - + + + An image segmentation map where voxel intensity values encode the location of the lateral ventricles in the brain and voxels outside the lateral ventricles have an intensity value of zero. + lateral ventricle segmentation map + - + - + - + - + - + - + - + - + - + - + - + - + - + - + + NCIT:C16809 + SCTID:113091000 + - + - + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + - + + + + - + + + + - + - + @@ -5231,6 +5543,16 @@ The values often belong to a group of pixels or voxels that share the same chara + + + + + 2024-07-30T23:59:13Z + passive + + + + @@ -5657,15 +5979,58 @@ The values often belong to a group of pixels or voxels that share the same chara - + + + + + + 2024-08-05T19:59:46Z + system process + + + + + + + + + + 2024-08-05T20:00:11Z + circulatory system process + + + + + + + + + + 2024-08-05T20:00:33Z + blood circulation + + + + + - + + + + 2024-08-05T19:59:16Z + multicellular organismal process + - + - + + + + 2024-08-05T20:04:03Z + nervous system process + @@ -5833,5 +6198,5 @@ The values often belong to a group of pixels or voxels that share the same chara - +