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geneXtendeR

R/Bioconductor package for optimized functional annotation of ChIP-seq data

Bioconductor Time DOI

To see geneXtendeR in action (and why you may want to use it as part of your next ChIP-seq workflow), see Section 1 of the vignette.

Github installation instructions (for latest updated version)

You can install the current GitHub version using the devtools package:

if (!require("devtools")) install.packages("devtools")
devtools::install_github("Bohdan-Khomtchouk/geneXtendeR")

And then load the package:

library(geneXtendeR)

Bioconductor landing page (updated biannually -- so possibly out-of-date)

geneXtendeR can be found at: https://bioconductor.org/packages/geneXtendeR/. This URL will redirect to the release landing page of the package and is the URL that should be used (in publications, etc.) to refer to geneXtendeR. You can also refer specifically to the development, release, or specific numbered version of Bioconductor:

https://bioconductor.org/packages/devel/geneXtendeR/

https://bioconductor.org/packages/release/geneXtendeR/

https://bioconductor.org/packages/3.8/geneXtendeR/

Bioconductor installation instructions

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("geneXtendeR")

Citation

Khomtchouk BB, Koehler WC, Van Booven DJ, Wahlestedt C: "Optimized functional annotation of ChIP-seq data." F1000Research. 2019, 8(612): https://doi.org/10.12688/f1000research.18966.1