Wrong image dimensions written for recent tifffile
#24
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votti
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Dec 2, 2024
More recent versions do not write the correct dimensions as discussed in issue BodenmillerGroup#24
votti
pushed a commit
to votti/xtiff
that referenced
this issue
Dec 2, 2024
More recent versions do not write the correct dimensions as discussed in issue BodenmillerGroup#24
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It seems like recent tifffile versions lead to
to_tiffnot writing images with the correct dimension.A reproducible example is added by extending the unittest to check for the correct image dimensions:
https://github.com/votti/xtiff/blob/799fe2fa5f6337030c63fdb5064f59bea6e7ddc0/tests/test_tiff.py#L25-L26
This failfs for
tifffile-2024.9.20but works fortifffile-2023.4.12.Likely this causes the issue reported here: BodenmillerGroup/ImcSegmentationPipeline#144 (comment)
A workaround would be to explicitly pin the
tifffileversionThe text was updated successfully, but these errors were encountered: