diff --git a/CHANGELOG.rst b/CHANGELOG.rst index f0c8a28..e489a81 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,47 +1,30 @@ -### Changelog +Changelog +========= -All notable changes to this project will be documented in this file. Dates are displayed in UTC. +Version 0.1.5 +------------- +- This updates Scipy for gaussian_filter (#20) +- Update thalamus (#18) +- Update condition for error from layer queries. Fix #16 (#17) -Generated by [`auto-changelog`](https://github.com/CookPete/auto-changelog). +Version 0.1.4 +------------- -#### [v0.1.5](https://github.com/BlueBrain/atlas-direction-vectors/compare/v0.1.4...v0.1.5) +- Added `direction-vectors from-center` command; a placeholder way to generate + orientation vectors for a particular region, by supplying a central point, + and emanating away -- This updates Scipy for gaussian_filter [`#20`](https://github.com/BlueBrain/atlas-direction-vectors/pull/20) -- Update thalamus [`#18`](https://github.com/BlueBrain/atlas-direction-vectors/pull/18) -- Update condition for error from layer queries. Fix #16 [`#17`](https://github.com/BlueBrain/atlas-direction-vectors/pull/17) -- Generalization of cerebellar cortex direction vectors computation. [`#9`](https://github.com/BlueBrain/atlas-direction-vectors/pull/9) -- Update condition for error from layer queries. Fix #16 (#17) [`#16`](https://github.com/BlueBrain/atlas-direction-vectors/issues/16) [`#16`](https://github.com/BlueBrain/atlas-direction-vectors/issues/16) -- update changelog [`ffb4808`](https://github.com/BlueBrain/atlas-direction-vectors/commit/ffb480823ba04d77cd9002d7862d350badc0fe26) +Version 0.1.2 +------------- -#### [v0.1.4](https://github.com/BlueBrain/atlas-direction-vectors/compare/v0.1.3...v0.1.4) +- Make 2 direction builders available in the `atlas-direction-vectors direction-vectors` application: + * layer-region: can specify for any layered region what the values are for + certain layer voxels, such that the blur-gradient is more accurate -> 6 January 2023 +Version 0.1.1 +------------- +- Open source release -- make numpy typing optional [`#14`](https://github.com/BlueBrain/atlas-direction-vectors/pull/14) -- * Make `--region` required for `direction_vectors from-center` [`186a764`](https://github.com/BlueBrain/atlas-direction-vectors/commit/186a7644acffe1845dfef2154788abcf29c81972) - -#### [v0.1.3](https://github.com/BlueBrain/atlas-direction-vectors/compare/v0.1.2...v0.1.3) - -> 4 January 2023 - -- update github actions [`#13`](https://github.com/BlueBrain/atlas-direction-vectors/pull/13) -- NSETM-2084 direction vectors from center [`#10`](https://github.com/BlueBrain/atlas-direction-vectors/pull/10) -- Cleanup [`#12`](https://github.com/BlueBrain/atlas-direction-vectors/pull/12) -- Citation section and badge added [`#8`](https://github.com/BlueBrain/atlas-direction-vectors/pull/8) -- added orientation example [`#6`](https://github.com/BlueBrain/atlas-direction-vectors/pull/6) -- fix failing linting [`#7`](https://github.com/BlueBrain/atlas-direction-vectors/pull/7) - -#### [v0.1.2](https://github.com/BlueBrain/atlas-direction-vectors/compare/v0.1.1...v0.1.2) - -> 18 May 2022 - -- Make `layer_based_direction_vectors` generation available from commandline [`#5`](https://github.com/BlueBrain/atlas-direction-vectors/pull/5) -- Make hemisphere handling an enum instead of a dict [`#4`](https://github.com/BlueBrain/atlas-direction-vectors/pull/4) - -#### v0.1.1 - -> 10 March 2022 - -- Initial commit: extracts the direction_vectors module from atlas-building-tools [NSETM-1685] [`f91b0cd`](https://github.com/BlueBrain/atlas-direction-vectors/commit/f91b0cdb84aee1d99e8ab9ff81767fdc0bd05520) -- OSS requirements [`600b42d`](https://github.com/BlueBrain/atlas-direction-vectors/commit/600b42d03a222ae2fd8df0e5ed565516b5ddd4df) -- switch to numpy.typing [`72b08aa`](https://github.com/BlueBrain/atlas-direction-vectors/commit/72b08aa23d7091a99ca4cc550c1f793259f49fe0) +Version 0.1.0 +------------- +- Initial commit: extracts the `direction_vectors` from internal tools diff --git a/README.rst b/README.rst index afa47bb..2e34666 100644 --- a/README.rst +++ b/README.rst @@ -1,4 +1,4 @@ -.. image:: atlas-direction-vectors.jpg +|banner| Overview ========= @@ -94,4 +94,8 @@ The development of this software was supported by funding to the Blue Brain Proj For license and authors, see LICENSE.txt and AUTHORS.txt respectively. -Copyright © 2022 Blue Brain Project/EPFL +Copyright © 2022-2024 Blue Brain Project/EPFL + +.. substitutions + +.. |banner| image:: doc/source/static/atlas-direction-vectors.jpg diff --git a/doc/source/direction_vectors.rst b/doc/source/direction_vectors.rst index db0c939..8adf36a 100644 --- a/doc/source/direction_vectors.rst +++ b/doc/source/direction_vectors.rst @@ -5,4 +5,3 @@ Direction vectors .. click:: atlas_direction_vectors.app.direction_vectors:app :prog: direction_vectors - :nested: full diff --git a/doc/source/readme.rst b/doc/source/readme.rst index a6210d3..7243a07 100644 --- a/doc/source/readme.rst +++ b/doc/source/readme.rst @@ -1 +1,4 @@ .. include:: ../../README.rst + :end-before: .. substitutions + +.. |banner| image:: static/atlas-direction-vectors.jpg diff --git a/atlas-direction-vectors.jpg b/doc/source/static/atlas-direction-vectors.jpg similarity index 100% rename from atlas-direction-vectors.jpg rename to doc/source/static/atlas-direction-vectors.jpg diff --git a/tox.ini b/tox.ini index efb5232..852b2c5 100644 --- a/tox.ini +++ b/tox.ini @@ -47,7 +47,7 @@ deps = sphinx-bluebrain-theme sphinx-click commands = make html SPHINXOPTS=-W -whitelist_externals = make +allowlist_externals = make [testenv:check-packaging] deps =