You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
GDCdownload(query_col_wxs, directory = "TCGA_DATA_DL")
Downloading data for project TCGA-COAD
GDCdownload will download 457 files. A total of 82.8324 MB
Downloading as: Sat_Feb_17_21_15_58_2024.tar.gz
Downloading: 83 MB <simpleWarning in file.create(to[okay]): cannot create file 'TCGA_DATA_DL/TCGA-COAD/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/61132188-579f-4baa-891f-9c9b2b3fae1f/e37894df-0715-4171-bb88-0b175dccee7f.wxs.aliquot_ensemble_masked.maf.gz', reason 'No such file or directory'>
The same error occurred in the remaining 400+ files. I checked to make sure the directory exists and ran RStudio as administrator.
Then I used the client method to download, and the error message was as follows.
Downloading data for project TCGA-COAD
trying URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip'
Error in download.file(url, ...) :
cannot open URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip'
In addition: Warning message:
In download.file(url, ...) :
URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip': status was 'URL using bad/illegal format or missing URL'
The text was updated successfully, but these errors were encountered:
GDCdownload(query_col_wxs, directory = "TCGA_DATA_DL")
Downloading data for project TCGA-COAD
GDCdownload will download 457 files. A total of 82.8324 MB
Downloading as: Sat_Feb_17_21_15_58_2024.tar.gz
Downloading: 83 MB <simpleWarning in file.create(to[okay]): cannot create file 'TCGA_DATA_DL/TCGA-COAD/Simple_Nucleotide_Variation/Masked_Somatic_Mutation/61132188-579f-4baa-891f-9c9b2b3fae1f/e37894df-0715-4171-bb88-0b175dccee7f.wxs.aliquot_ensemble_masked.maf.gz', reason 'No such file or directory'>
The same error occurred in the remaining 400+ files. I checked to make sure the directory exists and ran RStudio as administrator.
Then I used the client method to download, and the error message was as follows.
Downloading data for project TCGA-COAD
trying URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip'
Error in download.file(url, ...) :
cannot open URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip'
In addition: Warning message:
In download.file(url, ...) :
URL '/files/public/file/gdc-client_v1.6.1_Windows_x64.zip': status was 'URL using bad/illegal format or missing URL'
The text was updated successfully, but these errors were encountered: