From 9a80b47883746cef1693afb972b728b996f23064 Mon Sep 17 00:00:00 2001 From: Tiago Silva Date: Tue, 6 Jun 2023 13:17:43 -0400 Subject: [PATCH] Fixing test --- tests/testthat/test-prepare-download.R | 31 -------------------------- 1 file changed, 31 deletions(-) diff --git a/tests/testthat/test-prepare-download.R b/tests/testthat/test-prepare-download.R index e78c537de..4cf2ad8e3 100644 --- a/tests/testthat/test-prepare-download.R +++ b/tests/testthat/test-prepare-download.R @@ -376,37 +376,6 @@ test_that("Works for TARGET-NBL data", { -test_that("Works for TARGET-NBL data", { - skip_on_bioc() - skip_if_offline() - - - query <- GDCquery( - project = "TARGET-WT", - data.category = "Transcriptome Profiling", - experimental.strategy = "RNA-Seq", - workflow.type = "STAR - Counts", - data.type = "Gene Expression Quantification", - access = "open", - barcode = c( - "TARGET-30-PASYPX-01A-01R", - "TARGET-30-PANKFE-01A-01R", - "TARGET-30-PAIXIF-01A-01R", - "TARGET-20-PAWUEX-EOI2-14A", - "TARGET-30-PAPUAR-01A-01R", - "TARGET-30-PASCFC-01A", - "TARGET-30-PAPTFZ-01A" - ) - ) - - GDCdownload(query) - expect_equal(nrow(query$results[[1]]),7) - expect_no_error({ - data <- GDCprepare(query, summarizedExperiment = TRUE) - }) - expect_equal(ncol(data),7) -}) - test_that("Works for TARGET-ALL-P3 data", { skip_on_bioc()