diff --git a/generated/bamslicerbioc2024.Dockerfile b/generated/bamslicerbioc2024.Dockerfile
new file mode 100644
index 0000000..1c00381
--- /dev/null
+++ b/generated/bamslicerbioc2024.Dockerfile
@@ -0,0 +1,2 @@
+FROM ghcr.io/bioconductor/bioconductor:3.18
+RUN sudo apt-get update && sudo apt-get -y install apt-file && echo trichelab/bamSliceR | tr ',' '\n' > /tmp/pkglist && cat /tmp/pkglist | xargs -i Rscript -e "if (!require('rspm')) { install.packages('rspm'); rspm::enable(); }; p = BiocManager::install(c('{}'), dependencies = c('Depends', 'Imports', 'LinkingTo', 'Suggests')); if(p %in% rownames(installed.packages())) q(status = 0) else if(strsplit(p, '/')[[1]][2] %in% rownames(installed.packages())) q(status = 0) else q(status = 1)"
diff --git a/generated/workshop-values-bamslicerbioc2024.yaml b/generated/workshop-values-bamslicerbioc2024.yaml
new file mode 100644
index 0000000..8ca6cbe
--- /dev/null
+++ b/generated/workshop-values-bamslicerbioc2024.yaml
@@ -0,0 +1,35 @@
+ /galaxy/server/tools/interactive/biocworkshop_bamslicerbioc2024.xml:
+ useSecret: false
+ applyToJob: true
+ applyToSetupJob: true
+ applyToWeb: true
+ applyToWorkflow: true
+ applyToNginx: true
+ tpl: false
+ content: |
+
+ A standardized pipeline for extracting, annotating, and analyzing genomic variants across large controlled-access repositories
+
+ docker.io/bioconductor/workshop-contributions:devel-3431a869
+
+
+
+ 8787
+
+
+
+ true
+ $__history_id__
+ $__galaxy_url__
+ $__galaxy_url__
+
+
+ export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; if [ -f '/home/rstudio/bamSliceR/README.md' ]; then echo '/home/rstudio/bamSliceR/README.md' > /tmp/startfile; else echo '/home/rstudio/README.md' > /tmp/startfile; fi ; echo "{ 'visual_markdown_editing_is_default': true }" > /etc/rstudio/rstudio-prefs.json ; echo "setwd('/home/rstudio'); setHook('rstudio.sessionInit', function(newSession) { if (newSession) rstudioapi::filesPaneNavigate('\$(dirname \$(cat /tmp/startfile))'); rstudioapi::navigateToFile('\$(cat /tmp/startfile)') }, action = 'append')" > /home/rstudio/.Rprofile; export TEMP=/tmp TMP=/tmp TMPDIR=/tmp TEMPDIR=/tmp; chown -R rstudio /home/rstudio/*; rm /tmp/startfile; chown -R rstudio /home/rstudio/.*; /init
+
+
+
+
+
+
+ This is an autogenerated Bioconductor workshop wrapper. See the source of this workshop or report issues at https://github.com/trichelab/bamSliceR.
+
diff --git a/generated/workshop-values.yaml b/generated/workshop-values.yaml
index 3202270..f007511 100644
--- a/generated/workshop-values.yaml
+++ b/generated/workshop-values.yaml
@@ -1,5 +1,5 @@
extraFileMappings:
- /galaxy/server/tools/interactive/biocworkshop_bioc2024bamSliceR.xml:
+ /galaxy/server/tools/interactive/biocworkshop_bamslicerbioc2024.xml:
useSecret: false
applyToJob: true
applyToSetupJob: true
@@ -8,13 +8,13 @@ extraFileMappings:
applyToNginx: true
tpl: false
content: |
-
+
A standardized pipeline for extracting, annotating, and analyzing genomic variants across large controlled-access repositories
docker.io/bioconductor/workshop-contributions:devel-3431a869
-
+
8787