SurfR #3105

auroramaurizio · 2023-08-09T17:28:38Z

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bioc-issue-bot · 2023-08-09T17:28:40Z

Hi @auroramaurizio

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: SurfR
Type: Package
Title: Surface Protein Prediction and Identification
Version: 0.99.0
Authors@R:c(person("Aurora", "Maurizio", email="[email protected]", role = c("aut","cre")),
 person("Anna Sofia", "Tascini", email="[email protected]", role = c("aut", "ctb")))
Description: Identify Surface Protein coding genes from a list of candidates.
   Systematically download data from GEO and TCGA or use your own data. 
   Perform DGE on bulk RNAseq data. 
   Perform Meta-analysis. Descriptive enrichment analysis and plots.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Software, Sequencing, RNASeq, GeneExpression, Transcription, DifferentialExpression, 
 PrincipalComponent, GeneSetEnrichment, Pathways, BatchEffect,
 FunctionalGenomics, Visualization, DataImport
VignetteBuilder: knitr
RoxygenNote: 7.2.3
Imports:
  httr,
  SPsimSeq,
  DESeq2,
  edgeR,
  rio,
  openxlsx,
  stringr,
  rhdf5,
  ggplot2,
  ggrepel,
  stats,
  magrittr,
  assertr,
  tidyr,
  dplyr,
  TCGAbiolinks,
  biomaRt,
  metaRNASeq,
  enrichR,
  scales,
  venn,
  gridExtra,
  SummarizedExperiment,
  knitr,
  grDevices, 
  graphics, 
  utils

bioc-issue-bot · 2023-09-06T17:06:50Z

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bioc-issue-bot · 2023-09-06T17:10:25Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ERROR, skipped".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-09-11T13:51:54Z

Received a valid push on git.bioconductor.org; starting a build for commit id: 8d44c6b00562d4cee1af41ffbc00842a899434c5

auroramaurizio · 2023-09-11T14:02:41Z

Dear @PeteHaitch,

Thank you for the feedback.

We fixed the linux-platform issue in the vignette and submitted the updated version.

We have tested the package on a local Mac OS computer and the R CMD check succeeded. At the end of this message we report the sessionInfo().
Unfortunately, we could not reproduce the mac-related error highlighted in the lconway BUILD SRC output: "Rhdf5lib was not compiled with support for the S3 VFD". We read the chat between you and a former package submitter addressing the same topic #2753 (and checked the package source) as well as several posts by Mike Smith such as https://support.bioconductor.org/p/9134972/#9153888. It seems more like a macOS-Rhdf5 related problem. What's your advice?

Best wishes,

Aurora and Anna Sofia

sessionInfo()
R version 4.3.1 (2023-06-16)
Platform: x86_64-apple-darwin20 (64-bit)
Running under: macOS Monterey 12.6.3

Matrix products: default
BLAS: /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.3-x86_64/Resources/lib/libRlapack.dylib; LAPACK version 3.11.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: Europe/Rome
tzcode source: internal

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] stringr_1.5.0 SPsimSeq_1.10.0 SurfR_0.99.0 BiocManager_1.30.22

loaded via [1] splines_4.3.1 [6] preprocessCore_1.62.1 [11] edgeR_3.42.4 [16] magrittr_2.0.3 [21] zip_2.3.0 [26] rvest_1.0.3 [31] RCurl_1.98-1.12 [36] GenomeInfoDbData_1.2.10 [41] venn_1.11 [46] xml2_1.3.5 [51] BiocFileCache_2.8.0 [56] Formula_1.2-5 [61] progress_1.2.2 [66] admisc_0.33 [71] GenomeInfoDb_1.36.2 [76] digest_0.6.33 [81] RSQLite_2.3.1 [86] prettyunits_1.1.1 [91] gtable_0.3.4 [96] htmltools_0.5.6 [101] enrichR_3.2 [106] rjson_0.2.21 [111] rhdf5_2.44.0 [116] grid_4.3.1 [121] evaluate_0.21 [126] locfit_1.5-9.8 [131] plyr_1.8.8 [136] munsell_0.5.0 [141] ggplot2_3.4.3 [146] igraph_1.5.1 [151] ape_5.7-1 a namespace (and not attached):
bitops_1.0-7 filelock_1.0.2 tibble_3.2.1 cellranger_1.1.0
XML_3.99-0.14 rpart_4.1.19 lifecycle_1.0.3 fastcluster_1.2.3
doParallel_1.0.17 lattice_0.21-8 MASS_7.3-60 backports_1.4.1
openxlsx_4.2.5.2 limma_3.56.2 Hmisc_5.1-0 rmarkdown_2.24
DBI_1.1.3 ade4_1.7-22 abind_1.4-5 zlibbioc_1.46.0
GenomicRanges_1.52.0 purrr_1.0.2 metaRNASeq_1.0.7 BiocGenerics_0.46.0
phyloseq_1.44.0 nnet_7.3-19 WriteXLS_6.4.0 rappdirs_0.3.3
IRanges_2.34.1 S4Vectors_0.38.1 ggrepel_0.9.3 vegan_2.6-4
fitdistrplus_1.1-11 permute_0.9-7 codetools_0.2-19 DelayedArray_0.26.7
tidyselect_1.2.0 TCGAbiolinksGUI.data_1.20.0 matrixStats_1.0.0 stats4_4.3.1
dynamicTreeCut_1.63-1 base64enc_0.1-3 jsonlite_1.8.7 multtest_2.56.0
survival_3.5-7 iterators_1.0.14 foreach_1.5.2 tools_4.3.1
rio_0.5.30 Rcpp_1.0.11 glue_1.6.2 gridExtra_2.3
xfun_0.40 mgcv_1.9-0 DESeq2_1.40.2 MatrixGenerics_1.12.3
dplyr_1.1.3 fastmap_1.1.1 rhdf5filters_1.12.1 fansi_1.0.4
R6_2.5.1 colorspace_2.1-0 GO.db_3.17.0 biomaRt_2.56.1
utf8_1.2.3 tidyr_1.3.0 generics_0.1.3 data.table_1.14.8
httr_1.4.7 htmlwidgets_1.6.2 S4Arrays_1.0.6 pkgconfig_2.0.3
blob_1.2.4 impute_1.74.1 SingleCellExperiment_1.22.0 XVector_0.40.0
biomformat_1.28.0 scales_1.2.1 Biobase_2.60.0 png_0.1-8
knitr_1.43 rstudioapi_0.15.0 tzdb_0.4.0 reshape2_1.4.4
checkmate_2.2.0 nlme_3.1-163 curl_5.0.2 cachem_1.0.8
parallel_4.3.1 foreign_0.8-84 AnnotationDbi_1.62.2 pillar_1.9.0
vctrs_0.6.3 dbplyr_2.3.3 cluster_2.1.4 htmlTable_2.4.1
TCGAbiolinks_2.28.3 readr_2.1.4 mvtnorm_1.2-3 cli_3.6.1
compiler_4.3.1 rlang_1.1.1 crayon_1.5.2 assertr_3.0.0
forcats_1.0.0 stringi_1.7.12 WGCNA_1.72-1 BiocParallel_1.34.2
Biostrings_2.68.1 Matrix_1.6-1 hms_1.1.3 bit64_4.0.5
Rhdf5lib_1.22.0 KEGGREST_1.40.0 SummarizedExperiment_1.30.2 haven_2.5.3
memoise_2.0.1 bit_4.0.5 readxl_1.4.3 downloader_0.4

bioc-issue-bot · 2023-09-11T14:09:33Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ERROR, skipped".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.1.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-09-11T15:56:38Z

Received a valid push on git.bioconductor.org; starting a build for commit id: acf8a50bc5fd393b36a571b2be58056de10d8db5

bioc-issue-bot · 2023-09-11T15:58:15Z

Received a valid push on git.bioconductor.org; starting a build for commit id: acf8a50bc5fd393b36a571b2be58056de10d8db5

bioc-issue-bot · 2023-09-11T15:58:50Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ABNORMAL".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-09-11T16:12:57Z

Received a valid push on git.bioconductor.org; starting a build for commit id: 5a0f525af984db421c28f2809f6416373ea09cf4

bioc-issue-bot · 2023-09-11T16:13:23Z

Received a valid push on git.bioconductor.org; starting a build for commit id: 5a0f525af984db421c28f2809f6416373ea09cf4

bioc-issue-bot · 2023-09-11T16:13:57Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ABNORMAL".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-09-11T16:14:30Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ERROR, skipped".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-09-11T16:15:04Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Build System.

On one or more platforms, the build results were: "ERROR, skipped".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Bioconductor Build
System:
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.1.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

auroramaurizio · 2023-09-12T07:09:53Z

Dear @PeteHaitch,
It seems there might be a discrepancy between the package version in the build report and the actual version in the repositories.
Looking at the build report we noticed that the check is still made on package version 0.99.1 while the current version is 0.99.3.
We pushed the latest version on both origin and upstream repos.
Cloning https://git.bioconductor.org/packages/SurfR.git we see that everithing is up to date: the corrections have been implemented (removing SurfR.Proj file and updating .gitignore) and the version in DESCRIPTION is the latest 0.99.3.
Only the check on the build report is made on the old version 0.99.1.

Thank you for your attention to this matter.

Best,
Aurora and Anna Sofia

PeteHaitch · 2023-09-12T07:27:56Z

@lshep any idea about why an old version is getting picked up by the build system (see #3105 (comment))

lshep · 2023-09-12T11:36:00Z

It looks like something odd is going in; in particular also with the double build report kick off. yet we don't see this with other repositories. how exactly are you making changes and pushing to git.bioconductor.org?

auroramaurizio · 2023-09-12T12:57:15Z

Dear @lshep,
Thank you for your quick reply.

Here the commands:

git remote -v

#origin [email protected]:auroramaurizio/SurfR.git (fetch)
#origin [email protected]:auroramaurizio/SurfR.git (push)
#upstream [email protected]:packages/SurfR.git (fetch)
#upstream [email protected]:packages/SurfR.git (push)

git fetch --all
git merge origin/master
git merge upstream/master
git add .
git commit -m "bumped the package version 0.99.3"
git push origin master
git push upstream master
git push upstream master:devel

I think the double report kick off is due to the fact that I pushed to master instead of devel at first.
I got this message in the last commit:

git push upstream master

#Counting objects: 5, done.
#Delta compression using up to 8 threads.
#Compressing objects: 100% (3/3), done.
#Writing objects: 100% (3/3), 302 bytes | 0 bytes/s, done.
#Total 3 (delta 2), reused 0 (delta 0)
#remote: Use of 'master' branch is deprecated on git.bioconductor.org;
#remote: Access to 'master' will eventually be revoked.
#remote: Please use 'devel' to update Bioconductor devel version.
#remote: See: http://contributions.bioconductor.org/branch-rename-faqs.html
#To [email protected]:packages/SurfR.git
#acf8a50..5a0f525 master -> master

git push upstream master:devel

#Total 0 (delta 0), reused 0 (delta 0)
#To [email protected]:packages/SurfR.git
#acf8a50..5a0f525 master -> devel

I'll move to devel as prompt here http://contributions.bioconductor.org/branch-rename-faqs.html.
Hope it solves the issue.

Best,
Aurora

bioc-issue-bot · 2023-12-13T08:15:33Z

Received a valid push on git.bioconductor.org; starting a build for commit id: dc2aeb9c0cc5388ffd8ecf954edc8e0c82a886f3

bioc-issue-bot · 2023-12-13T08:20:55Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "skipped, ERROR".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
ERROR before build products produced.

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-12-13T08:34:13Z

Received a valid push on git.bioconductor.org; starting a build for commit id: 4ffb93e5be3264c085214b6e04ac4bc526370948

bioc-issue-bot · 2023-12-13T09:03:50Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "WARNINGS".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.50.tar.gz
macOS 12.7.1 Monterey: SurfR_0.99.50.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-12-13T15:29:48Z

Received a valid push on git.bioconductor.org; starting a build for commit id: f19045f087609f9430b3f8419f8e120266390516

bioc-issue-bot · 2023-12-13T15:31:55Z

Received a valid push on git.bioconductor.org; starting a build for commit id: eb28c6d948eacdd1148397aea0f00817127ce3af

bioc-issue-bot · 2023-12-13T16:00:20Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "WARNINGS".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
macOS 12.7.1 Monterey: SurfR_0.99.51.tar.gz
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.51.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-12-13T16:02:10Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

On one or more platforms, the build results were: "WARNINGS".
This may mean there is a problem with the package that you need to fix.
Or it may mean that there is a problem with the build system itself.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.52.tar.gz
macOS 12.7.1 Monterey: SurfR_0.99.52.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

bioc-issue-bot · 2023-12-17T13:07:56Z

Received a valid push on git.bioconductor.org; starting a build for commit id: 1810b382eb38098ebf18a4c92cdbf4092a7a6c2b

bioc-issue-bot · 2023-12-17T13:21:12Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
macOS 12.7.1 Monterey: SurfR_0.99.53.tar.gz
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.53.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

auroramaurizio · 2023-12-18T10:16:48Z

Hi @ococrook, I'm happy to tell you that the report is now successful on both Mac and Linux builders!

ococrook · 2024-01-10T13:40:33Z

Hi @auroramaurizio ,

Sorry this has been a slow proces, a final few things before we can finish this off:

Can you make the version of the package match between the NEWS file and Description?

Can you switch to the Biocstyle for the vignette?

youll need to add the following to the header

output:
  BiocStyle::html_document:
    toc_float: true

bioc-issue-bot · 2024-01-14T19:01:54Z

Received a valid push on git.bioconductor.org; starting a build for commit id: e965fd3ec11457c74e55a8863c55950fff8f6c5e

bioc-issue-bot · 2024-01-14T19:15:25Z

Dear Package contributor,

This is the automated single package builder at bioconductor.org.

Your package has been built on the Bioconductor Single Package Builder.

Congratulations! The package built without errors or warnings
on all platforms.

Please see the build report for more details.

The following are build products from R CMD build on the Single Package Builder:
macOS 12.7.1 Monterey: SurfR_0.99.54.tar.gz
Linux (Ubuntu 22.04.2 LTS): SurfR_0.99.54.tar.gz

Links above active for 21 days.

Remember: if you submitted your package after July 7th, 2020,
when making changes to your repository push to
[email protected]:packages/SurfR to trigger a new build.
A quick tutorial for setting up remotes and pushing to upstream can be found here.

auroramaurizio · 2024-01-14T19:54:21Z

Hi @ococrook,
I updated the vignette and the NEWS file as per your suggestions.
Thank you! Aurora

auroramaurizio · 2024-02-06T15:18:55Z

Dear @ococrook,
I hope you're doing well.
Do you think there is a chance SurfR package can be included in the upcoming April 2024 Bioconductor 3.19 release? Please let me know if I should do anything to proceed.
Thank you,
Best,
Aurora

bioc-issue-bot · 2024-02-13T18:13:54Z

Your package has been accepted. It will be added to the
Bioconductor nightly builds.

Thank you for contributing to Bioconductor!

Reviewers for Bioconductor packages are volunteers from the Bioconductor
community. If you are interested in becoming a Bioconductor package
reviewer, please see Reviewers Expectations.

ococrook · 2024-02-13T18:14:55Z

Hi Aurora,

Not sure what happen but I recall trying to accept this package several times now. Hopefully, it gone through now.

auroramaurizio · 2024-02-14T13:12:56Z

Thank you very much Oliver!
I wish you a great day,
Aurora

lshep · 2024-02-14T16:09:07Z

The default branch of your GitHub repository has been added to Bioconductor's
git repository as branch devel.

To use the git.bioconductor.org repository, we need an 'ssh' key to associate with your github user name. If your GitHub account already has ssh public keys (https://github.com/auroramaurizio.keys is not empty), then no further steps are required. Otherwise, do the following:

See further instructions at

https://bioconductor.org/developers/how-to/git/

for working with this repository. See especially

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https://bioconductor.org/developers/how-to/git/sync-existing-repositories/

to keep your GitHub and Bioconductor repositories in sync.

Your package will be included in the next nigthly 'devel' build (check-out from git at about 6 pm Eastern; build completion around 2pm Eastern the next day) at

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(Builds sometimes fail, so ensure that the date stamps on the main landing page are consistent with the addition of your package). Once the package builds successfully, you package will be available for download in the 'Devel' version of Bioconductor using BiocManager::install("SurfR"). The package 'landing page' will be created at

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If you have any questions, please contact the bioc-devel mailing list (https://stat.ethz.ch/mailman/listinfo/bioc-devel); this issue will not be monitored further.

bioc-issue-bot added the 1. awaiting moderation submitted and waiting clearance to access resources label Aug 9, 2023

vjcitn added pre-check passed pre-review performed and ready to be added to git and removed 1. awaiting moderation submitted and waiting clearance to access resources labels Sep 2, 2023

bioc-issue-bot added 2. review in progress assign a reviewer and a more thorough review of package code and documentation taking place and removed pre-check passed pre-review performed and ready to be added to git labels Sep 6, 2023

bioc-issue-bot assigned PeteHaitch Sep 6, 2023

bioc-issue-bot added the ERROR label Sep 6, 2023

bioc-issue-bot added ABNORMAL and removed ERROR labels Sep 11, 2023

bioc-issue-bot added ERROR and removed ABNORMAL labels Sep 11, 2023

PeteHaitch mentioned this issue Sep 11, 2023

S3 VFD in Rhdf5lib support for TENxIO tests on Mac Bioconductor/BBS#245

Open

bioc-issue-bot removed the ERROR label Dec 13, 2023

bioc-issue-bot added ERROR and removed WARNINGS labels Dec 13, 2023

bioc-issue-bot added WARNINGS and removed ERROR labels Dec 13, 2023

bioc-issue-bot added OK and removed WARNINGS labels Dec 17, 2023

ococrook added 3a. accepted will be ingested into Bioconductor daily builder for distribution and removed 2. review in progress assign a reviewer and a more thorough review of package code and documentation taking place labels Feb 13, 2024

lshep closed this as completed Feb 14, 2024

SurfR #3105

SurfR #3105

Comments

auroramaurizio commented Aug 9, 2023

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auroramaurizio commented Sep 12, 2023 • edited Loading

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lshep commented Feb 14, 2024

auroramaurizio commented Sep 12, 2023 •

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