From a4367bb00e1ec5814d290595e50f5b20bdd377c3 Mon Sep 17 00:00:00 2001
From: Can Alkan <calkan@gmail.com>
Date: Thu, 16 May 2019 19:15:06 +0300
Subject: [PATCH] command line now printed to the log file

---
 processbam.h | 2 +-
 tardis.c     | 5 +++++
 2 files changed, 6 insertions(+), 1 deletion(-)

diff --git a/processbam.h b/processbam.h
index 8dceaea..57c12b1 100644
--- a/processbam.h
+++ b/processbam.h
@@ -9,7 +9,7 @@
 #include "config.h"
 
 /* Sample this many fragments to calculate avg/median/std per library */
-#define SAMPLEFRAG 1000000 
+#define SAMPLEFRAG 100000 
 
 /* Maximum sequence/quality length */
 #define MAX_SEQ 1000
diff --git a/tardis.c b/tardis.c
index 0252f0a..c56c32d 100644
--- a/tardis.c
+++ b/tardis.c
@@ -57,6 +57,11 @@ int main( int argc, char** argv)
 	fprintf( logFile, "#CreationDate=%d.%d.%d\n\n", timeinfo->tm_year + 1900, timeinfo->tm_mon + 1, timeinfo->tm_mday);
 	free(log_file_path);
 
+	fprintf( logFile, "Command line:\n \t%s ", argv[0]);
+	for ( i = 1; i < argc; i++)
+	  fprintf( logFile, "%s ", argv[i]);
+	fprintf( logFile, "\n\n");	
+	
 	/* Load configuration file (created if it does not exist) */
 	cfg = ( configuration*) getMem( sizeof( configuration));
 	load_config( cfg, params);