diff --git a/variants.c b/variants.c index c9b3799..17531e7 100644 --- a/variants.c +++ b/variants.c @@ -600,7 +600,7 @@ void print_vcf_header( FILE *fpOut, bam_info** in_bams, parameters *params) fprintf(fpOut, "%s%s%s%s", header_info,header_filter,header_format,header_alt); /* Contig field */ - for( i = params->first_chr; i <= params->last_chr; i++) + for( i = params->first_chr; i < params->last_chr; i++) fprintf(fpOut, "##contig=<ID=%s,length=%d>\n", params->this_sonic->chromosome_names[i], params->this_sonic->chromosome_lengths[i]); fprintf(fpOut, "%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s\t%s","#CHROM","POS","ID","REF","ALT","QUAL","FILTER","INFO","FORMAT");