biowardrobe_chipseq_se.yaml

fastq_file:
  class: File
  location: "./data/inputs/SRR1198790.fastq"
  format: "http://edamontology.org/format_1930"
indices_folder:
  class: Directory
  location: "./data/references/dm3/bowtie_indices"
annotation_file:
  class: File
  location: "./data/references/dm3/refgene.tsv"
  format: "http://edamontology.org/format_3475"
chrom_length:
  class: File
  location: "./data/references/dm3/chrNameLength.txt"
  format: "http://edamontology.org/format_2330"
clip_3p_end: 0
clip_5p_end: 0
remove_duplicates: false
exp_fragment_size: 150
force_fragment_size: false
broad_peak: false
threads: 2
genome_size: "1.2e8"