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DESCRIPTION
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Package: vaxpack
Type: Package
Title: Provide Fast Population Genetic Analysis For A Single Gene
Version: 0.1.0
Authors@R: as.person(c(
"Elijah Martin <[email protected]> [aut, cre]",
"Myo Naung <[email protected]> [aut]"
))
Maintainer: Elijah Martin <[email protected]>, Myo Naung <[email protected]>
Date: January
Year: 2019
Description: A package for quickly analysing the diversity
within a gene of a haploid organism, all in the same place.The input requires
aligned .fasta files and receive population genetic statistics in no time.
The package is very easy to use relative to other R packages, and is intended
for biologists with minimal command line based knowledge.The graphical output
includes Tajima's D, Segregation Sites (S), and nucleotide diversity plots. You
can customize your own minior allele frequency cut-off point, and sliding window
scales.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 3.1.0)
Imports:
ggplot2,
plotly,
ape,
vegan,
magrittr,
grDevices,
graphics,
tibble