conf.json

{
	"constants": { 
		"smallInitialSize": 15000,
		"smallTestsPerYear": 3000,
		"mediumInitialSize": 150000,
		"mediumTestsPerYear": 30000,
		"largeInitialSize": 1000000,
		"largeTestsPerYear": 450000,
			"p0": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
			"p1_PM3": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
    		"p2_PM6": {
				"low": 0.0014,
				"med": 0.007,
				"hi": 0.025
			},
    		"p3_BS2": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
    		"p4_BP2": {
				"low": "0.001 * self.frequency",
				"med": "0.005 * self.frequency",
				"hi": "0.02 * self.frequency"
			},
    		"p5_BP5": {
				"low": 0.00002,
				"med": 0.0001,
				"hi": 0.0021505376
			},
    		"p6_PP1": {
				"low": 0.05,
				"med": 0.23,
				"hi": 0.67
			},
    		"p7_PS2": {
				"low": 0.0006,
				"med": 0.003,
				"hi": 0.02
			},
    		"p8_BS4": {
				"low": 0.0001,
				"med": 0.001,
				"hi": 0.17
			},
    		"b0": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
    		"b1_PM3": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
    		"b2_PM6": {
				"low": 0.0007,
				"med": 0.0035,
				"hi": 0.01
			},
    		"b3_BS2": {
				"low": 0,
				"med": 0,
				"hi": 0
			},
    		"b4_BP2": {
				"low": "self.frequency",
				"med": "self.frequency",
				"hi": "self.frequency"
			},
    		"b5_BP5": {
				"low": 0.038,
				"med": 0.099,
				"hi": 0.36
			},
			"b6_PP1": {
				"low": 0.005,
				"med": 0.01,
				"hi": 0.0625
			},
    		"b7_PS2": {
				"low": 0.0001,
				"med": 0.0015,
				"hi": 0.005
			},
    		"b8_BS4": {
				"low": 0.025,
				"med": 0.1,
				"hi": 0.4063
			},
    		"PS": 18.7,
    		"PM": 4.3,
    		"PP": 2.08,
    		"BS": 0.053475935828877004,
    		"BP": 0.4807692307692307,
    		"PSF": 2.0,
		"benignThreshold": -3,
		"likelyBenignThreshold": -1.256958152560932,
		"neutralThreshold": 0,
		"likelyPathogenicThreshold": 1.256958152560932,
		"pathogenicThreshold": 2.0
	},
	"simulation": {
		"name": "mySim",
		"nSmall": 1,
		"nMedium": 1,
		"nLarge": 1,
		"numVariants": 1,
		"frequency": 1e-5,
		"years": 5,
		"seed": 18,
		"numThreads": 2
	}
}