-
Notifications
You must be signed in to change notification settings - Fork 32
Release Notes
maryjgoldman edited this page Aug 1, 2017
·
29 revisions
This page describes the timing of the upcoming releases to the BRCA Exchange data and portal, and documents recent releases. In accordance to the development process, the software development proceeds in specific stages of:
- first prototyping new functionality with wireframes or software prototypes
- then soliciting feedback on those prototypes from the larger BRCA Exchange community, and updating the prototypes and wireframes accordingly
- next developing software to implement the functionality prototyped,
- finally staging a beta release, in which the software is evaluated in its accuracy at implementing the prototyped functionality.
- Released to beta on August 24, 2017
- Target release to production on August 31, 2017
- Splicing data will be generated by the pipeline
- Allele frequency graphs on variant detail pages
- Link to download new splicing data. This will be a separate download from our current download since the data is so different
- Released to beta on August 1, 2017
- Target release to production on August 7, 2017
- Under the Variant Detail pages in the All Public Data portal, the genomic coordinates are now hyperlinked to the UCSC Genome Browser, and its new BRCA Exchange track hub! Credits to Max Haeussler and Zack Fischmann.
- The Facts & Stats pages now offers graphs showing the breakdown of variants by expert review status.
- Max allele frequency is now calculated from the subpopulations in ExAC, 1000 Genomes and ESP, as the largest of any reference population allele frequency.
- Max allele frequency is now one of the default columns in the All Public Data portal, replacing Allele Frequency (which is still available as an optional field)
- Released to beta on June 26, 2017
- Target release to production on June 30, 2017
- Adds content from ExAC Minus TCGA: allele frequencies, allele counts, allele numbers, and homozygous allele counts for the subpopulations AFR, AMR, EAS, FIN, NFE, OTH, SAS.
- Released to beta on May 24, 2017
- Target release to production on May 31, 2017
- Adds the LOVD fields Variant Effect, Genetic Origin, Submitters, Functional Analysis Method and Functional Analysis Result. Many thanks to the LOVD team!
- Adds the Show / Hide Column Section buttons to the All Public Data portal.
- Makes column selection and filter selection persistent between sessions.
- Adds the Restore Defaults button to restore default settings for column selection and filters.
- Released to beta on April 24, 2017
- Target release to production on May 1, 2017
- New tiled user interface for the variant details pages
- New Facts & Stats page
- Released to beta on March 22, 2017
- Target release to production on March 29, 2017
- Back-end refactoring
- Released to beta on February 21, 2011
- Target release to production on March 1, 2017
- Updates the data
- Adds the video to the home page
- Adds the Data Submission Policy
- Released to beta on December 12, 2016
- Released to production on January 6, 2017
- An interface to allow users to see how the data on a variant has been changing, implementing the Versioning 2.0 wireframes.
- Released to beta on November 3, 2016
- Released to production on November 8, 2016
- An interface to allow users to download previous versions of the download data, implementing the Versioning 1.0 wireframes.
- Release notes outlining what major changes have been made to the variant data since the previous release, and showing the provenance of that data.
- Updated data
- Data generated by automated execution of Luigi scripts.
- Support GA4GH APIs, along with a help page on how to use these APIs
- Released to beta on Aug 30, 2016
- Released to production on Sept 12, 2016
- A world map showing the geographic locations of the community members
- Ability for users to register their accounts and log in to change account information
- Automated email notification when users create new accounts
- Password recovery
- Updated navigation bar at top of screen
- For reference here is a link to the wireframes
- Released to beta on Aug 18, 2016
- Released to production on Aug 29, 2016
- Replaces the previous Default Mode / Research Pages toggle on the menu bar with a new Expert Reviewed / All Public Data toggle in the upper text box on the Variants page.
- Provides specific user interface features in Expert Reviewed mode as outlined in the Expert Reviewed Wireframes
- Updated wording on the front page
Note: We had anticipated updating the variant data with this release. We have had to delay the update to ensure the quality of the data to be released. We anticipate having new data available near the beginning of September.