diff --git a/pyproject.toml b/pyproject.toml index 2cf3008..b7be37b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,30 +6,27 @@ build-backend = "setuptools.build_meta" name = "openhexa.toolbox" version = "0.1.4" description = "A set of tools to acquire & process data from various sources" -authors = [ - { name = "Bluesquare", email = "dev@bluesquarehub.com"} -] -maintainers = [ - { name = "Bluesquare", email = "dev@bluesquarehub.com" } -] +authors = [{ name = "Bluesquare", email = "dev@bluesquarehub.com" }] +maintainers = [{ name = "Bluesquare", email = "dev@bluesquarehub.com" }] license = { file = "LICENSE" } readme = "README.md" classifiers = [ "Programming Language :: Python :: 3", "License :: OSI Approved :: MIT License", - "Operating System :: OS Independent" + "Operating System :: OS Independent", ] requires-python = ">=3.8" -dependencies = [ - "requests", - "python-dateutil", - "pandas", - "polars", - "diskcache" -] +dependencies = ["requests", "python-dateutil", 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Time","lastAnalyticsTableSuccess":"2023-08-08T00:02:53.828","intervalSinceLastAnalyticsTableSuccess":"9 + h, 50 m, 10 s","lastAnalyticsTableRuntime":"00:03:57.976","lastSystemMonitoringSuccess":"2019-03-26T17:07:15.418","version":"2.37.9.1","revision":"aec9de0","buildTime":"2023-04-14T13:37:57.000","jasperReportsVersion":"6.3.1","environmentVariable":"DHIS2_HOME","fileStoreProvider":"filesystem","readOnlyMode":"off","nodeId":"play-dhis2-org-2-37-9-1","javaVersion":"11.0.19","javaVendor":"Ubuntu","osName":"Linux","osArchitecture":"amd64","osVersion":"4.15.0-1057-aws","externalDirectory":"/ebs1/home/instances/2.37.9.1/home","databaseInfo":{"name":"2-37-9-1","user":"dhis","url":"jdbc:postgresql://localhost:5432/2-37-9-1","databaseVersion":"PostgreSQL + 10.23","spatialSupport":true},"readReplicaCount":0,"memoryInfo":"Mem Total in + JVM: 1320 Free in JVM: 743 Max Limit: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.37.9.1/api/dataValueSets?dataSet=QX4ZTUbOt3a&period=202202&orgUnit=sFgNRYS5pBo&orgUnit=vELbGdEphPd&orgUnit=OTn9VMNEkdo&orgUnit=jKZ0U8Og5aV&children=False diff --git a/tests/dhis2/responses/2.37/data_value_sets/get_start_end.yaml b/tests/dhis2/responses/2.37/data_value_sets/get_start_end.yaml new file mode 100644 index 0000000..7a03051 --- /dev/null +++ b/tests/dhis2/responses/2.37/data_value_sets/get_start_end.yaml @@ -0,0 +1,15 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.38.4.3/api/analytics?dimension=dx%3AJMKtVQ5HasH&dimension=ou%3ALEVEL-1%3BLEVEL-2&dimension=pe%3A202202&dimension=co%3A&paging=True&ignoreLimit=True diff --git a/tests/dhis2/responses/2.38/authenticate.yaml b/tests/dhis2/responses/2.38/authenticate.yaml new file mode 100644 index 0000000..11a9991 --- /dev/null +++ b/tests/dhis2/responses/2.38/authenticate.yaml @@ -0,0 +1,18 @@ +responses: +- response: + auto_calculate_content_length: false + body: pong + content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.38.4.3/api/system/ping +- response: + auto_calculate_content_length: false + body: '{"contextPath":"https://play.dhis2.org/2.38.4.3","userAgent":"python-requests/2.31.0","calendar":"iso8601","dateFormat":"yyyy-mm-dd","serverDate":"2023-08-08T09:53:04.520","serverTimeZoneId":"Etc/UTC","serverTimeZoneDisplayName":"Coordinated + Universal Time","lastAnalyticsTableSuccess":"2023-08-08T00:06:50.013","intervalSinceLastAnalyticsTableSuccess":"9 + h, 46 m, 14 s","lastAnalyticsTableRuntime":"00:04:11.898","lastSystemMonitoringSuccess":"2019-03-26T17:07:15.418","version":"2.38.4.3","revision":"4119e92","buildTime":"2023-06-30T12:56:10.000","databaseInfo":{"spatialSupport":false},"encryption":false,"emailConfigured":false,"redisEnabled":false,"systemName":"DHIS + 2 Demo - Sierra Leone","instanceBaseUrl":"https://play.dhis2.org/2.38.4.3","isMetadataVersionEnabled":true}' + content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.38.4.3/api/system/info diff --git a/tests/dhis2/responses/2.38/data_value_sets/get_period.yaml b/tests/dhis2/responses/2.38/data_value_sets/get_period.yaml new file mode 100644 index 0000000..7319f6e --- /dev/null +++ b/tests/dhis2/responses/2.38/data_value_sets/get_period.yaml @@ -0,0 +1,29 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.38.4.3/api/dataValueSets?dataSet=QX4ZTUbOt3a&period=202202&orgUnit=sFgNRYS5pBo&orgUnit=vELbGdEphPd&orgUnit=OTn9VMNEkdo&orgUnit=jKZ0U8Og5aV&children=False diff --git a/tests/dhis2/responses/2.38/data_value_sets/get_start_end.yaml b/tests/dhis2/responses/2.38/data_value_sets/get_start_end.yaml new file mode 100644 index 0000000..0580852 --- /dev/null +++ b/tests/dhis2/responses/2.38/data_value_sets/get_start_end.yaml @@ -0,0 +1,15 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.39.2.1/api/analytics?dimension=dx%3AJMKtVQ5HasH&dimension=ou%3ALEVEL-1%3BLEVEL-2&dimension=pe%3A202202&dimension=co%3A&paging=True&ignoreLimit=True diff --git a/tests/dhis2/responses/2.39/authenticate.yaml b/tests/dhis2/responses/2.39/authenticate.yaml new file mode 100644 index 0000000..1a48b88 --- /dev/null +++ b/tests/dhis2/responses/2.39/authenticate.yaml @@ -0,0 +1,18 @@ +responses: +- response: + auto_calculate_content_length: false + body: pong + content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.39.2.1/api/system/ping +- response: + auto_calculate_content_length: false + body: '{"contextPath":"https://play.dhis2.org/2.39.2.1","userAgent":"python-requests/2.31.0","calendar":"iso8601","dateFormat":"yyyy-mm-dd","serverDate":"2023-08-08T09:53:04.871","serverTimeZoneId":"Etc/UTC","serverTimeZoneDisplayName":"Coordinated + Universal Time","lastAnalyticsTableSuccess":"2023-08-08T00:10:29.977","intervalSinceLastAnalyticsTableSuccess":"9 + h, 42 m, 34 s","lastAnalyticsTableRuntime":"00:04:21.477","lastSystemMonitoringSuccess":"2019-03-26T17:07:15.418","version":"2.39.2.1","revision":"99a70d2","buildTime":"2023-06-30T12:54:22.000","databaseInfo":{"spatialSupport":false},"encryption":false,"emailConfigured":false,"redisEnabled":false,"systemName":"DHIS + 2 Demo - Sierra Leone","instanceBaseUrl":"https://play.dhis2.org/2.39.2.1","isMetadataVersionEnabled":true}' + content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.39.2.1/api/system/info diff --git a/tests/dhis2/responses/2.39/data_value_sets/get_period.yaml b/tests/dhis2/responses/2.39/data_value_sets/get_period.yaml new file mode 100644 index 0000000..e5589f8 --- /dev/null +++ b/tests/dhis2/responses/2.39/data_value_sets/get_period.yaml @@ -0,0 +1,29 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/2.39.2.1/api/dataValueSets?dataSet=QX4ZTUbOt3a&period=202202&orgUnit=sFgNRYS5pBo&orgUnit=vELbGdEphPd&orgUnit=OTn9VMNEkdo&orgUnit=jKZ0U8Og5aV&children=False diff --git a/tests/dhis2/responses/2.39/data_value_sets/get_start_end.yaml b/tests/dhis2/responses/2.39/data_value_sets/get_start_end.yaml new file mode 100644 index 0000000..95b10fd --- /dev/null +++ b/tests/dhis2/responses/2.39/data_value_sets/get_start_end.yaml @@ -0,0 +1,15 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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Time","lastAnalyticsTableSuccess":"2023-08-08T00:14:23.640","intervalSinceLastAnalyticsTableSuccess":"9 + h, 38 m, 41 s","lastAnalyticsTableRuntime":"00:04:22.999","lastSystemMonitoringSuccess":"2019-03-26T17:07:15.418","version":"2.40.0.1","revision":"cddb161","buildTime":"2023-06-30T12:54:09.000","databaseInfo":{"spatialSupport":false},"encryption":false,"emailConfigured":false,"redisEnabled":false,"systemName":"DHIS + 2 Demo - Sierra Leone","instanceBaseUrl":"https://play.dhis2.org/40.0.1","isMetadataVersionEnabled":true}' + content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/40.0.1/api/system/info diff --git a/tests/dhis2/responses/2.40/data_value_sets/get_period.yaml b/tests/dhis2/responses/2.40/data_value_sets/get_period.yaml new file mode 100644 index 0000000..f345e87 --- /dev/null +++ b/tests/dhis2/responses/2.40/data_value_sets/get_period.yaml @@ -0,0 +1,29 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/40.0.1/api/dataValueSets?dataSet=QX4ZTUbOt3a&period=202202&orgUnit=sFgNRYS5pBo&orgUnit=vELbGdEphPd&orgUnit=OTn9VMNEkdo&orgUnit=jKZ0U8Og5aV&children=False diff --git a/tests/dhis2/responses/2.40/data_value_sets/get_start_end.yaml b/tests/dhis2/responses/2.40/data_value_sets/get_start_end.yaml new file mode 100644 index 0000000..882c4bc --- /dev/null +++ b/tests/dhis2/responses/2.40/data_value_sets/get_start_end.yaml @@ -0,0 +1,15 @@ +responses: +- response: + auto_calculate_content_length: false + body: 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+ content_type: text/plain + method: GET + status: 200 + url: https://play.dhis2.org/40.0.1/api/dataValueSets?dataSet=QX4ZTUbOt3a&startDate=2022-01-01&endDate=2022-03-01&orgUnit=sFgNRYS5pBo&orgUnit=vELbGdEphPd&orgUnit=OTn9VMNEkdo&orgUnit=jKZ0U8Og5aV&children=False diff --git a/tests/dhis2/test_dhis2.py b/tests/dhis2/test_dhis2.py new file mode 100644 index 0000000..e5b9201 --- /dev/null +++ b/tests/dhis2/test_dhis2.py @@ -0,0 +1,229 @@ +import pytest +import responses +import os + +from openhexa.toolbox.dhis2 import DHIS2 + + +class DHIS2Connection: + """dummy connection class""" + + def __init__(self, url, username, password): + self.url = url + self.username = username + self.password = password + + +URL = [ + ("2.37", "https://play.dhis2.org/2.37.9.1"), + ("2.38", "https://play.dhis2.org/2.38.4.3"), + ("2.39", "https://play.dhis2.org/2.39.2.1"), + ("2.40", "https://play.dhis2.org/40.0.1"), +] +USERNAME = "admin" +DISTRICT = "district" + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_authenticate(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + con = DHIS2Connection(url, USERNAME, DISTRICT) + dhis2 = DHIS2(con) + assert dhis2.version.startswith(version) + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_data_value_sets_get_start_end(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "data_value_sets", "get_start_end.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.data_value_sets.MAX_DATA_ELEMENTS = 2 + playground.data_value_sets.MAX_ORG_UNITS = 6 + playground.data_value_sets.MAX_PERIODS = 1 + + data = playground.data_value_sets.get( + datasets=["QX4ZTUbOt3a"], + org_units=[ + "JQr6TJx5KE3", + "KbO0JnhiMwl", + "f90eISKFm7P", + "HNv1aLPdMYb", + "hHKKi9WNoBG", + "kpDoH80fwdX", + "sFgNRYS5pBo", + "vELbGdEphPd", + "OTn9VMNEkdo", + "jKZ0U8Og5aV", + ], + start_date="2022-01-01", + end_date="2022-03-01", + ) + + assert len(data) == 607 + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_data_value_sets_get_period(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "data_value_sets", "get_period.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.data_value_sets.MAX_DATA_ELEMENTS = 2 + playground.data_value_sets.MAX_ORG_UNITS = 6 + playground.data_value_sets.MAX_PERIODS = 1 + + data = playground.data_value_sets.get( + datasets=["QX4ZTUbOt3a"], + org_units=[ + "JQr6TJx5KE3", + "KbO0JnhiMwl", + "f90eISKFm7P", + "HNv1aLPdMYb", + "hHKKi9WNoBG", + "kpDoH80fwdX", + "sFgNRYS5pBo", + "vELbGdEphPd", + "OTn9VMNEkdo", + "jKZ0U8Og5aV", + ], + periods=["202201", "202202"], + ) + + assert len(data) == 607 + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_analytics_data_elements(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "analytics", "get_data_elements.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.analytics.MAX_DX = 2 + playground.analytics.MAX_ORG_UNITS = 6 + playground.analytics.MAX_PERIODS = 1 + + data = playground.analytics.get( + data_elements=["FJs8ZjlQE6f", "yJwdE6XJbrF", "JMKtVQ5HasH"], + periods=["202201", "202202"], + org_units=[ + "JQr6TJx5KE3", + "KbO0JnhiMwl", + "f90eISKFm7P", + "HNv1aLPdMYb", + "hHKKi9WNoBG", + "kpDoH80fwdX", + "sFgNRYS5pBo", + "vELbGdEphPd", + "OTn9VMNEkdo", + "jKZ0U8Og5aV", + ], + ) + + assert len(data) == 14 + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_analytics_data_element_groups(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "analytics", "get_data_element_groups.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.analytics.MAX_DX = 2 + playground.analytics.MAX_ORG_UNITS = 6 + playground.analytics.MAX_PERIODS = 1 + + data = playground.analytics.get( + data_element_groups=["IUZ0GidX0jh"], + periods=["202201", "202202"], + org_units=[ + "JQr6TJx5KE3", + "KbO0JnhiMwl", + "f90eISKFm7P", + "HNv1aLPdMYb", + "hHKKi9WNoBG", + "kpDoH80fwdX", + "sFgNRYS5pBo", + "vELbGdEphPd", + "OTn9VMNEkdo", + "jKZ0U8Og5aV", + ], + ) + + assert len(data) == 14 + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_analytics_org_unit_groups(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "analytics", "get_org_unit_group.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.analytics.MAX_DX = 2 + playground.analytics.MAX_ORG_UNITS = 6 + playground.analytics.MAX_PERIODS = 1 + + data = playground.analytics.get( + data_elements=["FJs8ZjlQE6f", "yJwdE6XJbrF", "JMKtVQ5HasH"], + periods=["202201", "202202"], + org_unit_groups=["b0EsAxm8Nge"], + ) + + assert len(data) == 57 + + +@responses.activate +@pytest.mark.parametrize("version,url", URL) +def test_analytics_org_unit_level(version, url): + responses.patch(url) + responses._add_from_file(file_path=os.path.join("tests", "dhis2", "responses", version, "authenticate.yaml")) + responses._add_from_file( + file_path=os.path.join("tests", "dhis2", "responses", version, "analytics", "get_org_unit_level.yaml") + ) + + con = DHIS2Connection(url, USERNAME, DISTRICT) + playground = DHIS2(con) + + playground.analytics.MAX_DX = 2 + playground.analytics.MAX_ORG_UNITS = 6 + playground.analytics.MAX_PERIODS = 1 + + data = playground.analytics.get( + data_elements=["FJs8ZjlQE6f", "yJwdE6XJbrF", "JMKtVQ5HasH"], + periods=["202201", "202202"], + org_unit_levels=[1, 2], + ) + + assert len(data) == 252 diff --git a/tests/dhis2/test_dhis2_periods.py b/tests/dhis2/test_dhis2_periods.py new file mode 100644 index 0000000..45a1f34 --- /dev/null +++ b/tests/dhis2/test_dhis2_periods.py @@ -0,0 +1,121 @@ +import pytest +from datetime import datetime + +from openhexa.toolbox.dhis2.periods import Day, Week, Month, Year, Quarter, SixMonth, period_from_string + + +def test_day(): + d1 = Day("20220101") + d2 = Day(datetime(2022, 1, 1)) + assert d1 == d2 + + with pytest.raises(ValueError): + Day("2022-01-01") + + +def test_day_range(): + d1 = Day("20220130") + d2 = Day("20220202") + drange = d1.get_range(d2) + assert drange == [Day("20220130"), Day("20220131"), Day("20220201"), Day("20220202")] + + d2 = Day("20220120") + with pytest.raises(ValueError): + d1.get_range(d2) + + +def test_week(): + w1 = Week("2022W4") + w2 = Week(datetime(2022, 1, 25)) + assert w1 == w2 + + with pytest.raises(ValueError): + Week("2022W04") + + +def test_week_range(): + w1 = Week("2022W4") + w2 = Week("2022W6") + wrange = w1.get_range(w2) + assert wrange == [Week("2022W4"), Week("2022W5"), Week("2022W6")] + + +def test_month(): + m1 = Month("202201") + m2 = Month(datetime(2022, 1, 1)) + assert m1 == m2 + + with pytest.raises(ValueError): + Month("2022-01") + + +def test_month_range(): + m1 = Month("202201") + m2 = Month("202204") + mrange = m1.get_range(m2) + assert mrange == [Month("202201"), Month("202202"), Month("202203"), Month("202204")] + + +def test_year(): + y1 = Year("2022") + y2 = Year(datetime(2022, 1, 1)) + assert y1 == y2 + + +def test_year_range(): + y1 = Year("2022") + y2 = Year("2025") + yrange = y1.get_range(y2) + assert yrange == [Year("2022"), Year("2023"), Year("2024"), Year("2025")] + + +def test_quarter(): + q1 = Quarter("2021Q4") + q2 = Quarter(datetime(2021, 12, 1)) + assert q1 == q2 + + +def test_quarter_range(): + q1 = Quarter("2021Q4") + q2 = Quarter("2022Q2") + qrange = q1.get_range(q2) + assert qrange == [Quarter("2021Q4"), Quarter("2022Q1"), Quarter("2022Q2")] + + +def test_six_month(): + sm1 = SixMonth("2022S2") + sm2 = SixMonth(datetime(2022, 12, 1)) + assert sm1 == sm2 + + +def test_six_month_range(): + sm1 = SixMonth("2022S2") + sm2 = SixMonth("2023S2") + smrange = sm1.get_range(sm2) + assert smrange == [SixMonth("2022S2"), SixMonth("2023S1"), SixMonth("2023S2")] + + +def test_period_from_string(): + p1 = period_from_string("20220101") + p2 = Day("20220101") + assert p1 == p2 + + p1 = period_from_string("202201") + p2 = Month("202201") + assert p1 == p2 + + p1 = period_from_string("2022W1") + p2 = Week("2022W1") + assert p1 == p2 + + p1 = period_from_string("2022") + p2 = Year("2022") + assert p1 == p2 + + p1 = period_from_string("2022Q1") + p2 = Quarter("2022Q1") + assert p1 == p2 + + p1 = period_from_string("2022S1") + p2 = SixMonth("2022S1") + assert p1 == p2