From 934499bba6676ab0f7bba5047e270dd35849b81b Mon Sep 17 00:00:00 2001
From: dleebhsai <dlee@bhsai.org>
Date: Tue, 29 Jan 2019 11:09:57 -0500
Subject: [PATCH] Edited some functionalities.

---
 Src/CommonTools/struct2array.m  |  5 ++++-
 Src/FigureTools/flippedLegend.m | 29 +++++++++++++++++++++++++++++
 Src/FigureTools/setAxes.m       |  3 +++
 Src/FileIOTools/openSeqData.m   |  1 +
 4 files changed, 37 insertions(+), 1 deletion(-)
 create mode 100644 Src/FigureTools/flippedLegend.m

diff --git a/Src/CommonTools/struct2array.m b/Src/CommonTools/struct2array.m
index 09f04eb..26626ab 100644
--- a/Src/CommonTools/struct2array.m
+++ b/Src/CommonTools/struct2array.m
@@ -4,7 +4,7 @@
 %
 %  INPUT
 %    S: nonscalor structure
-%    RowOrCol ['row' 'col']: specify if the put each row as a field and 
+%    RowOrCol ['row' 'col' 'input']: specify if the put each row as a field and 
 %      data, or each col as a field and data. Default is 'col'. 
 %
 %  EXAMPLE
@@ -32,6 +32,9 @@
         C = horzcat(F, C);
     case 'col'
         C = vertcat(F', C');
+    case 'input'
+        C = vertcat(F', C');
+        C = C(:)';
     otherwise
         error('%s: Unrecognized option "%s". Use ''row'' or ''col''.', mfilename, RowOrCol);
 end
\ No newline at end of file
diff --git a/Src/FigureTools/flippedLegend.m b/Src/FigureTools/flippedLegend.m
new file mode 100644
index 0000000..38a07a2
--- /dev/null
+++ b/Src/FigureTools/flippedLegend.m
@@ -0,0 +1,29 @@
+%flippedLegend is a modifier for the Matlab's legend, in which the legends
+%are drawn in flipper order to matched stacked bar plots. Simply use
+%flippedLegend similar to legend.m
+
+function varargout = flippedLegend(varargin)
+[Lx1, Lx2] = legend(varargin{:});
+
+Types = arrayfun(@(x) x.Type, Lx2, 'un', 0);
+TextIdx = find(strcmpi(Types, 'text'));
+HggIdx = find(strcmpi(Types, 'hggroup'));
+
+%Swap the text positions
+AllPos = flipud(vertcat(Lx2(TextIdx).Position));
+for j = 1:numel(TextIdx)
+    Lx2(TextIdx(j)).Position = AllPos(j, :);
+end
+
+%Swap the box positions
+AllVert = cell(numel(HggIdx), 1);
+for j = 1:numel(HggIdx)
+    AllVert{j} = get(Lx2(HggIdx(j)).Children, 'Vertices');
+end
+AllVert = flipud(AllVert);
+for j = 1:numel(HggIdx)
+    set(Lx2(HggIdx(j)).Children, 'Vertices', AllVert{j});
+end
+
+varargout{1} = Lx1;
+varargout{2} = Lx2;
\ No newline at end of file
diff --git a/Src/FigureTools/setAxes.m b/Src/FigureTools/setAxes.m
index 6ec76e3..a5e2380 100644
--- a/Src/FigureTools/setAxes.m
+++ b/Src/FigureTools/setAxes.m
@@ -28,6 +28,9 @@
 %
 function setAxes(varargin)
 [Axs, varargin] = getOpenGCA(varargin{:});
+if numel(varargin) == 1 && isstruct(varargin{1})
+    varargin = struct2array(varargin{1}, 'input');
+end
 
 for a = 1:length(Axs)
     %Modify the Axes handle
diff --git a/Src/FileIOTools/openSeqData.m b/Src/FileIOTools/openSeqData.m
index 9dbff01..66b9453 100644
--- a/Src/FileIOTools/openSeqData.m
+++ b/Src/FileIOTools/openSeqData.m
@@ -29,6 +29,7 @@
 if nargin == 0
     FullFileName = getBriliaFiles('', 0, 0);
 else
+    varargin = cleanCommandLineInput(varargin{:});
     if contains(varargin{1}, {'.', filesep})
         FullFileName = dir2(varargin{1}, 'file');
         varargin = varargin(2:end);