users.csv

name,description,underneath,url
(EXperimental ACTions) Biomedical Protocol Ontology (EXACT2),,Ontologies,http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4255744
(Microbial) Typing Ontology (TypOn),,Ontologies,http://www.phyloviz.net/typon
ACGT Master Ontology (ACGT MO),,Ontologies,http://bioportal.bioontology.org/ontologies/ACGT-MO
Actionable Intelligence Retrieval System (AIRS),,Ontologies,http://ncor.buffalo.edu/ontologies/AIRS_Ontologies.pdf
Addiction Ontology (Addict-O),,Ontologies,https://onlinelibrary.wiley.com/doi/10.1111/add.16010
Additive Manufacturing Ontology (AMO),,Ontologies,https://www.sciencedirect.com/science/article/pii/S0166361518301647
Adolescent Depression Ontology (ADO),,Ontologies,https://www.jmir.org/article/viewFile/jmir_v19i7e259/2
Adverse Event Reporting Ontology (AERO),,Ontologies,http://purl.obolibrary.org/obo/aero
AFO Foundational Ontology,,Ontologies,http://esw.w3.org/topic/HCLS/AFO_Foundational_Ontology
African Wildlife Ontology (AWO),,Ontologies,https://arxiv.org/pdf/1905.09519.pdf
Agronomic Linked Data (AgroLD),,Ontologies,https://www.biorxiv.org/content/10.1101/325423v3.full.pdf
Agronomy Ontology (AGRO),,Ontologies,https://bigdata.cgiar.org/resources/agronomy-ontology/
Algorithm-Implementation-Execution Ontology Design Pattern,,Ontologies,http://ontologydesignpatterns.org/wiki/images/4/41/WOP2016_paper_07.pdf
Alzheimer Disease Ontology (ADO),,Ontologies,http://www.sciencedirect.com/science/article/pii/S155252601300085X
Alzheimer's Disease Diagnosis Ontology (ADDO),,Ontologies,https://ma.x-mol.com/paper/1366901247607140352
Anatomy of the Insect Skeleto-Muscular system ontology (AISM),,Ontologies,https://www.preprints.org/manuscript/202201.0254/v1
Animals in Context Ontology (ACO),,Ontologies,http://ceur-ws.org/Vol-897/session1-paper04.pdf
Antimicrobial-Microorganism Ontology,,Ontologies,https://www.sciencedirect.com/science/article/pii/S1532046411001675
Apollo Structured Vocabulary (Apollo-SV),,Ontologies,http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0092-y
ARIES (Arkansas Imaging Enterprise System) Knowledge Graph,,Ontologies,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8866818/
Asset Management Ontology (AMODO),,Ontologies,https://www.sciencedirect.com/science/article/abs/pii/S2452414X21000947
Autism-DSM-ADI-R Ontology (ADAR),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/26151311
Bacterial Clinical Infectious Diseases Ontology (BCIDO),,Ontologies,http://www.sciencedirect.com/science/article/pii/S1532046415001549
Baden Württemberg Materials Digital Domain Ontology (BWMD),,Ontologies,https://matportal.org/ontologies/BWMD-DOMAIN
Bank Ontology,,Ontologies,http://world-comp.org/p2011/IKE5165.pdf
Battle Management Ontology (BMO),,Ontologies,http://link.springer.com/article/10.1007/s10489-016-0834-7
Behavior Change Intervention Ontology (BCIO),,Ontologies,https://wellcomeopenresearch.org/articles/5-123
Behavior Perspective Model (BPM),,Ontologies,https://books.google.com/books?hl=en&lr=lang_en&id=u8xmCgAAQBAJ&oi=fnd&pg=PA366&ots=p35Xg1rqn0&sig=6VibTWt8Y6mpTSyPFFc68xHePDw#v=onepage&q&f=false
Beta Cell Genomics Application Ontology (BCGO),,Ontologies,http://obofoundry.org/ontology/bcgo.html
Bio-Knowledge Network Ontology (BioKNO),,Ontologies,https://www.degruyter.com/view/journals/jib/15/3/article-20180023.xml
BioAssay Ontology,,Ontologies,http://www.bioassayontology.org/
Bioinformatics Web Service Ontology (OBIWS),,Ontologies,https://github.com/obi-webservice/OBIws
Biological Collections Ontology (BCO),,Ontologies,http://obofoundry.org/ontology/bco.html
Biomedical Ethics Ontology,,Ontologies,http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2725426/
"Biomedical Grid Terminology (BiomedGT, retired)",,Ontologies,https://wiki.nci.nih.gov/pages/viewpage.action?pageId=63996208
Biomedical Study - Lifecycle Management (BMS-LM) core ontology,,Ontologies,https://doi.org/10.1016/j.jbi.2022.104007
Biomimetic Ontology,,Ontologies,http://link.springer.com/chapter/10.1007/978-3-319-31782-3_13
BioTop,: a biomedical top-domain ontology,Ontologies,http://ebooks.iospress.nl/publication/46379
Blood Ontology (BLO),,Ontologies,http://mba.eci.ufmg.br/BLO
Body Fluids Ontology (BFLO),,Ontologies,http://ontology.buffalo.edu/smith/articles/BFLO_ICBO_2011.pdf
Bone Dysplasia Ontology (BDO),(see also [here](http://www.ncbi.nlm.nih.gov/pubmed/22449239)  ),Ontologies,http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338382/
Cancer Cell Ontology (OncoCL),,Ontologies,http://ceur-ws.org/Vol-1060/icbo2013_submission_75.pdf
Cancer Chemoprevention Ontology (CanCo),,Ontologies,http://bioportal.bioontology.org/ontologies/CANCO
Cardiovascular Disease Ontology (CVDO),,Ontologies,https://www.ebi.ac.uk/ols/ontologies/cvdo
Case Based Reasoning (CBR) Ontology,,Ontologies,https://doi.org/10.1109/ISSE51541.2021.9582535
Categorical Temporal Phenomenology,,Ontologies,http://www.roentgensemiotics.net/phenomenology.htm
Causal Pathway Ontology,,Ontologies,https://www.researchprotocols.org/2022/5/e34990
Cell Behavior Ontology (CBO),,Ontologies,http://cbo.biocomplexity.indiana.edu/
Cell Culture Ontology (CCONT),,Ontologies,https://bioportal.bioontology.org/ontologies/CCONT
Cell Cycle Ontology,,Ontologies,https://genomebiology.biomedcentral.com/articles/10.1186/gb-2009-10-5-r58
"Cell Expression, Localization, Development and Anatomy Ontology (CELDA)",,Ontologies,http://nar.oxfordjournals.org.gate.lib.buffalo.edu/content/early/2013/12/03/nar.gkt1264.full.pdf
Cell Line Ontology (CLO),,Ontologies,http://obofoundry.org/ontology/clo.html
Cell Ontology,: designed as a structured controlled vocabulary for cell types,Ontologies,http://obofoundry.org/ontology/cl.html
Cellular Microscopy Phenotype Ontology (CMPO),,Ontologies,http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0074-0
Character Computing Ontology (CCOnto),,Ontologies,https://www.researchgate.net/publication/350106623_CCOnto_The_Character_Computing_Ontology
Chemical Analysis Ontology (CAO),,Ontologies,http://champ-project.org/
Chemical Entities of Biological Interest (ChEBI),,Ontologies,http://www.ebi.ac.uk/chebi
Chemical Information Ontology (CHEMINF),,Ontologies,http://obofoundry.org/ontology/cheminf.html
Chemical Methods Ontology (CHMO),,Ontologies,http://obofoundry.org/ontology/chmo.html
CHRONIOUS Ontology Suite,,Ontologies,http://ceur-ws.org/Vol-833/paper22.pdf
CIDO-COVID-19,,Ontologies,https://ieeexplore.ieee.org/abstract/document/9629555
Cigarette Smoke Exposure Ontology (CSEO),,Ontologies,http://www.jbiomedsem.com/content/pdf/2041-1480-5-31.pdf
Clinical Data Integration Model (CDMO),,Ontologies,https://www.ncbi.nlm.nih.gov/pubmed/24954896
Clinical Narrative Temporal Relation Ontology (CNTRO),,Ontologies,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3248753/?
Clinical Trial Protocol Ontology (CTP-O),,Ontologies,https://www.sciencedirect.com/science/article/pii/S1569190X18301114
Clusters of Orthologous Groups (COG) Analysis Ontology (CAO),,Ontologies,https://bioportal.bioontology.org/ontologies/CAO
Cognition-Guided Surgery (CGS) Ontology,,Ontologies,http://archiv.ub.uni-heidelberg.de/volltextserver/22579
Cognitive Paradigm Ontology (COGPO),,Ontologies,http://cogpo.org/
Cognitive Process Ontology (CPO),,Ontologies,
Collaborative Learning Healthcare Systems (CLHS) ontology,,Ontologies,https://onlinelibrary.wiley.com/doi/full/10.1002/lrh2.10306
Common Anatomy Reference Ontology (CARO),: anatomical structures in all organisms,Ontologies,http://obofoundry.org/ontology/caro.html
Common Core Cyber Ontology (C3O),,Ontologies,https://www-spiedigitallibrary-org.gate.lib.buffalo.edu/conference-proceedings-of-spie/10635/106350F/A-common-core-based-cyber-ontology-in-support-of-cross/10.1117/12.2307719.full?SSO=1
Common Core Ontologies (CCO),,Ontologies,https://www.cubrc.org/index.php/data-science-and-information-fusion/ontology
Communication Standards Ontology (CSO),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/20543345
Comparative Data Analysis Ontology (CDAO),,Ontologies,https://bioportal.bioontology.org/ontologies/CDAO
Computational Neuroscience Ontology (CNO),,Ontologies,https://bioportal.bioontology.org/ontologies/CNO
Computer Aided Engineering Modeling Language (CAEML) Ontology,,Ontologies,https://www.clics-network.org/downloads/NAFEMS_2016_Towards%20Cognitive%20Computer%20Aided%20Engineering.pdf
Computer-Based Patient Record Ontology (CPRO),,Ontologies,https://code.google.com/archive/p/cpr-ontology/
Conceptual Model Ontology (CMO),,Ontologies,http://ceur-ws.org/Vol-833/paper25.pdf
Core Data Integration Model (CDIM),,Ontologies,https://www.researchgate.net/publication/263323866_Clinical_Data_Integration_Model_Core_Interoperability_Ontology_for_Research_Using_Primary_Care_Data
Core Ontology for Describing Production Equipment (OCore),,Ontologies,https://doi.org/10.3390/asi5050098
Coriell Cell Line Ontology,,Ontologies,http://efo.sourceforge.net/coriell.htm
Coronavirus Infectious Disease Ontology (CIDO),,Ontologies,http://www.ontobee.org/ontology/cido
CPR Ontology for the Institute of Medicine's (IOM) Computer-Based Patient Record Ontology,,Ontologies,http://ceur-ws.org/Vol-833/paper28.pdf
Crop Planning and Production Process Ontology (C3PO),,Ontologies,http://ceur-ws.org/Vol-2969/paper12-IFOW.pdf
CybOnto (Cognitive Digital Twin Ontology for CyberSecurity),,Ontologies,https://arxiv.org/pdf/2108.00551.pdf
Cybonto Cyber Security Ontology,,Ontologies,https://arxiv.org/abs/2108.00551
Dairy Cattle Performance Ontology (DCPO),,Ontologies,http://ceur-ws.org/Vol-3073/paper3.pdf
Data Integration Aggregated Model for Nuclear Deployment (DIAMOND),,Ontologies,https://link.springer.com/chapter/10.1007/978-3-030-82083-1_2
Data Model for Representing Biographical Information for Prosopography (Bio-CRM),,Ontologies,https://seco.cs.aalto.fi/publications/2018/tuominen-et-al-rrl-2018.pdf
Data Use Ontology (DUO),see also [here](https://doi.org/10.1016/j.xgen.2021.100028) ,Ontologies,http://www.obofoundry.org/ontology/duo.html
Decision Ontology,,Ontologies,https://doi.org/10.3390/systems6040046
Diabetes mellitus Diagnosis Ontology (DDO),,Ontologies,http://link.springer.com/article/10.1186/s40535-016-0021-2
Diabetes Mellitus Treatment Ontology (DMTO),,Ontologies,https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-018-0176-y
Digital Construction Ontologies (DiCon) Suite,,Ontologies,https://digitalconstruction.github.io/v/0.5/
Digital Engineering Framework for Integration and Interoperability (DEFII),,Ontologies,https://arxiv.org/ftp/arxiv/papers/2206/2206.10454.pdf
Digital Objects in Philosophy Ontology (DOPHO),,Ontologies,https://publiscologne.th-koeln.de/frontdoor/deliver/index/docId/1363/file/MAT_Seidlmayer.pdf
Document Act Ontology (D-Acts),,Ontologies,https://code.google.com/p/d-acts
Drug Interaction Ontology (DIO),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/15360854
Drug Ontology (DrOn),,Ontologies,http://obofoundry.org/ontology/dron.html
Drug Repurposing Ontology (DRO),,Ontologies,https://www.researchgate.net/profile/Werner_Ceusters/publication/335079148_Foundations_for_a_Realism-based_Drug_Repurposing_Ontology/links/5d4d7ce44585153e5948eb68/Foundations-for-a-Realism-based-Drug-Repurposing-Ontology.pdf
Drug-drug Interaction Evidence Ontology (DIDEO),,Ontologies,http://obofoundry.org/ontology/dideo.html
Drug-drug Interaction Ontology (DINTO),,Ontologies,http://www.obofoundry.org/ontology/dinto.html
E-Cigarette Ontology (E-CigO),,Ontologies,https://doi.org/10.1111/add.16010
Eagle-I Research Resource Ontology (ERO),,Ontologies,https://open.med.harvard.edu/wiki/display/eaglei/Ontology
EifcOWL (Enhanced Ontology for the Construction Industry Foundation Classes),see also [here](http://basic-formal-ontology.org/content.iospress.com/articles/applied-ontology/ao210254) ,Ontologies,https://content.iospress.com/articles/applied-ontology/ao210254
Electrocardiography Ontology (ECG),,Ontologies,http://www.j-biomed-inform.com/article/S1532-0464(10)00118-8/abstract
Eligibility Criteria Ontology (EC-O),,Ontologies,https://www.sciencedirect.com/science/article/pii/S1569190X18301114
Email Ontology,,Ontologies,http://ncor.buffalo.edu/2013/STIDS/5-Email.pptx
Emotion Ontology (EMO),: an ontology to describe affective phenomena,Ontologies,http://www.obofoundry.org/ontology/mfoem.html
ENanoMapper (ENM),,Ontologies,https://github.com/enanomapper
End of Life (EoL) Domain Ontology,,Ontologies,https://www.sciencedirect.com/science/article/abs/pii/S0167739X19326640
Engineering-to-BioMimetic Ontology (E2BMO),,Ontologies,https://www.mdpi.com/2411-9660/2/4/53
Environment Ontology,,Ontologies,http://obofoundry.org/ontology/envo.html
ENVOn (3D shape ontology),,Ontologies,http://www.semantic-web-journal.net/system/files/swj3043.pdf
Epidemiology Ontology (EPO),,Ontologies,http://obofoundry.org/ontology/epo.html
Epilepsy and Seizure Ontology (EPSO),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/23686934
Epilepsy Ontology (EPIO),,Ontologies,https://www.researchsquare.com/article/rs-1259791/v1
European Materials Modeling Ontology (EMMO),,Ontologies,https://emmc.info/wp-content/uploads/2017/12/EMMC_IntOp2017-Cambridge_Ghedini_Bologna.pdf
Event-Based Functional Behavior Ontology (EFBO),,Ontologies,http://ceur-ws.org/Vol-1660/caos-paper2.pdf
Event-Based Ontology for Historical Description (EOHD),,Ontologies,https://www.emeraldinsight.com/doi/abs/10.1108/DLP-02-2018-0005
Evolution Ontology (EO),,Ontologies,https://code.google.com/archive/p/evolution-ontology/
Experimental Factor Ontology (EFO),,Ontologies,http://www.ebi.ac.uk/efo
Exposé,: an ontology for data mining experiments),Ontologies,https://lirias.kuleuven.be/bitstream/123456789/273222/1/sokd10.pdf
eXtended Formal Ontology (XFO),,Ontologies,https://www.researchgate.net/profile/Robert_Allen5/publication/325141757_XFO_Toward_Programming_Rich_Semantic_Models/links/5afa473d458515c00b6bd24f/XFO-Toward-Programming-Rich-Semantic-Models.pdf?origin=publication_detail
"FASTO Ontology (incorporates BFO, FHIR, CPG,and SSN)",,Ontologies,https://bioportal.bioontology.org/ontologies/FASTO
Feedback Intervention Ontology (FIO),,Ontologies,https://github.com/Display-Lab
Financial Documents Ontology (FIN),,Ontologies,http://ceur-ws.org/Vol-2969/paper57-SoLEE.pdf
Fission Yeast Phenotype Ontology (FYPO),,Ontologies,http://www.pombase.org/documentation/gene-page-phenotypes
"Flower-Visiting Domain Ontology (FV), Known Flower-Visiting Group Domain Ontology (KFG), Flower-Visiting Behavior Application Ontology (FVB) and Observation-Date Application Ontology (OBD)",,Ontologies,http://www.sciencedirect.com/science/article/pii/S157495411400082X
Flybase Drosophila Anatomy Ontology (DAO),,Ontologies,http://obofoundry.org/ontology/fbbt.html
Flybase Drosophila Phenotype Ontology (FYPO),,Ontologies,http://obofoundry.org/ontology/fypo.html
Food Ontology (FoodOn),,Ontologies,http://obofoundry.org/ontology/foodon.html
Food Recipe Ingredient Substitution Ontology (FRISO),,Ontologies,https://doi.org/10.3390/s22031095
Food-Energy-Water Systems Ontology (FEWsONT),,Ontologies,https://www.liebertpub.com/doi/full/10.1089/ees.2018.0551
Foundational Model of Anatomy (FMA),,Ontologies,http://obofoundry.org/ontology/fma.html
Framework for Semantic Workflow Composition in the Geology Domain,,Ontologies,http://ceur-ws.org/Vol-2228/abstract6.pdf
Gastrointestinal Endoscopy Ontology (GIEO),,Ontologies,http://ceur-ws.org/Vol-833/paper36.pdf
"Gender, Sex, and Sexual Orientation (GSSO) ontology",,Ontologies,https://academic-oup-com.gate.lib.buffalo.edu/jamia/advance-article-abstract/doi/10.1093/jamia/ocaa061/5858296
Gene Ontology (GO),,Ontologies,http://obofoundry.org/ontology/go.html
Gene Regulation Ontology (GRO),,Ontologies,https://ub-madoc.bib.uni-mannheim.de/35191/1/dissertation_beisswanger.pdf
General Information Model (GIM),,Ontologies,http://jamia.bmj.com/content/20/5/986.full
GENIAL! Basic Ontology (GBO),,Ontologies,https://github.com/wawrzik/GENIALOntologies
Genomic Epidemiology Ontology (GenEpiO),,Ontologies,http://obofoundry.org/ontology/genepio.html
Genomic Feature and Variation Ontology (GFVO),,Ontologies,https://peerj.com/articles/933/
Genomics Integrated Biobanking Ontology (GIBO),,Ontologies,https://github.com/Nits11/GIBO
GeoCore Geology Ontology,see also [here](https://doi.org/10.1016/j.cageo.2019.104387) ,Ontologies,https://www.lume.ufrgs.br/bitstream/handle/10183/225741/001129935.pdf
Geographical Entity Ontology (GEO),,Ontologies,http://www.obofoundry.org/ontology/geo.html
Geological Spatial Relations Ontology,,Ontologies,https://github.com/BDI-UFRGS/GeologicalSpatialRelationsOntology
GeoReservoir Ontology,,Ontologies,https://doi.org/10.1016/j.cageo.2021.105005
GeoReservoir ontology for deep-marine depositional system geometry,,Ontologies,https://www.sciencedirect.com/science/article/pii/S0098300421002880
GeoSPARQL,,Ontologies,https://opengeospatial.github.io/ogc-geosparql/geosparql11/spec.pdf
Gestalt,: Federated Access to Cyber Observables for Detection of Targeted Attack,Ontologies,https://ieeexplore.ieee.org/abstract/document/6956738
Global Electronic Health Record Ontology (G-EHR-O),,Ontologies,https://www.sciencedirect.com/science/article/pii/S1569190X18301114
Glyco-Enzyme Pathway and Molecular Function Ontology (GlycoEnzOnto),,Ontologies,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9750110/
"Graphs, Objects, Points, Properties, Roles, and Relationships Ontology (GOPPRRE)",with extensions,Ontologies,https://ieeexplore.ieee.org/stamp/stamp.jsp?arnumber=9534721
Health Data Ontology Trunk (HDOT),,Ontologies,http://purl.org/hdot
Healthy City (HC) Ontology,,Ontologies,https://doi.org/10.3390/su132413844
Hemocomponents and Hemoderivatives Ontology (HEMONTO),,Ontologies,http://mba.eci.ufmg.br/downloads/ontobras-2013_paper1.pdf
HERMES 4D Printing Ontology,,Ontologies,https://www.sciencedirect.com/science/article/pii/S0264127521007486
Host Pathogen Interactions Ontology (HPO),,Ontologies,http://bioportal.bioontology.org/ontologies/HPIO?p=classes
Human Activity and Infrastructure Foundry (HAIF),,Ontologies,https://arxiv.org/ftp/arxiv/papers/1809/1809.09548.pdf
Human Disease Ontology (DOID),,Ontologies,http://www.obofoundry.org/ontology/doid.html
Human Experience Realist Ontology (HERO),,Ontologies,https://www.researchgate.net/publication/316557588_A_Human_Experience_Realist_Ontology_in_Basic_Formal_Ontology
Human Interaction Network Ontology (HINO),,Ontologies,http://arxiv.org/pdf/1311.3355.pdf
Human Physiology Simulation Ontology (HuPSON),(see also [here](http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177144/)  ),Ontologies,http://www.jbiomedsem.com/content/pdf/2041-1480-4-35.pdf
Industrial Ontologies Foundry (IOF) Core Ontology,,Ontologies,http://ceur-ws.org/Vol-3240/paper3.pdf
Infectious Disease Ontology,,Ontologies,http://obofoundry.org/ontology/ido.html
Information Artifact Ontology (IAO),,Ontologies,http://obofoundry.org/ontology/iao.html
Information Security Domain (ISD) ontology,,Ontologies,https://ieeexplore.ieee.org/abstract/document/8795392
Informed Consent Ontology (ICO),,Ontologies,http://ceur-ws.org/Vol-2285/ICBO_2018_paper_59.pdf
Innovative Capabilities of Additive Manufacturing (ICAM) Ontology,,Ontologies,http://computingengineering.asmedigitalcollection.asme.org/article.aspx?articleid=2674329
Integrative and Conjugative Element Ontology (ICEO),,Ontologies,https://doi.org/10.1038/s41597-021-01112-5
Integrated Framework for Additively Manufactured Products (IFAMP) ontology,,Ontologies,https://buffalo.app.box.com/v/integrating-ontologies
Interaction Network Ontology (INO),,Ontologies,http://www.cmpe.boun.edu.tr/~ozgur/papers/VDOS2014.pdf
Interdisciplinary Prostate Ontology Project (IPOP),,Ontologies,http://ipop.ontodev.com/
"International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",,Ontologies,http://www.ic-foods.org/
Interoperative Neuromonitoring Ontology (IOM),,Ontologies,https://pubmed.ncbi.nlm.nih.gov/35062118/
Intervention Setting Ontology,,Ontologies,https://wellcomeopenresearch.org/articles/5-124
Intracranial Aneurysm (ICA) Ontology,,Ontologies,http://www.sciencedirect.com/science/article/pii/S1532046415000519
Intraoperative Neurophysiological Monitoring Document Ontology (IOMDO),,Ontologies,https://www.researchsquare.com/article/rs-2026582/v1
Iranian Traditional Medicine General Ontology (IrGO),,Ontologies,https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-021-00237-1
Knowledge Base Of Biomedicine (KaBOB),,Ontologies,http://www.biomedcentral.com/content/pdf/s12859-015-0559-3.pdf
Knowledge Object Reference Ontology (KORO),,Ontologies,https://onlinelibrary.wiley.com/doi/full/10.1002/lrh2.10054
Laser Powder Bed Fusion Ontology (LPBFO),,Ontologies,https://matportal.org/ontologies/LPBFO
Library of Integrated Network-based Cellular Signatures,,Ontologies,https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-017-1981-5
Lipid Ontology,,Ontologies,http://obofoundry.org/ontology/lipro.html
Literary Theme Ontology (LTO),,Ontologies,https://www.researchgate.net/publication/332832296_The_Literary_Theme_Ontology_for_Media_Annotation_and_Information_Retrieval
Machine Learning Schema (ML-Schema) ontology,,Ontologies,https://openreview.net/pdf?id=B1e8MrXVxQ
Maintenance Activity Reference Ontology,,Ontologies,http://www.semantic-web-journal.net/system/files/swj3067.pdf
Major histocompatibility complex (MHC) Restriction Ontology (MRO),,Ontologies,http://obofoundry.org/ontology/mro.html
Malaria Ontology (IDOMAL),,Ontologies,http://obofoundry.org/ontology/idomal.html
Manufacturing Service Description Language (MSDL) ontology,,Ontologies,https://link.springer.com/chapter/10.1007/978-3-319-99707-0_40
Manufacturing Supply Chain Ontology (MSCO),,Ontologies,https://buffalo.box.com/s/rbapg73v4jq18dvw0rf2jnszndvnxmb0
Material Science and Engineering Ontology (MSEO),,Ontologies,https://matportal.org/ontologies/MSEO
Medication Adherence Behavior Ontology (MAB-Ontology),,Ontologies,https://scholarworks.iupui.edu/bitstream/handle/1805/17767/Sawesi_iupui_0104D_10326.pdf
Mental Disease Ontology (MFO-MD),,Ontologies,http://obofoundry.org/ontology/mfomd.html
Mental Functioning Ontology (MF),,Ontologies,http://obofoundry.org/ontology/mf.html
Microbiology Ontology (MicrO),,Ontologies,http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0060-6
Middle Layer Ontology for Clinical Care (MLOCC),,Ontologies,http://p-medicine.eu/project/wp-4
Military Ontology,,Ontologies,http://basic-formal-ontology.org/publications#salmen
Military Scenario Ontology (MSO),,Ontologies,http://link.springer.com/article/10.1007/s10489-016-0834-7
Minimum Information Model for Patient Safety (MIMPS),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/27139388
miRNAO,: an Ontology Unfolding the Domain of microRNAs,Ontologies,http://iwbbio.ugr.es/2014/papers/IWBBIO_2014_paper_103.pdf
MIRO and IRbase,: IT Tools for the Epidemiological Monitoring of Insecticide Resistance in Mosquito Disease Vectors,Ontologies,http://www.plosntds.org/article/info:doi/10.1371/journal.pntd.0000465
Mission and Means Framework (MMF) Ontology,,Ontologies,https://ieeexplore.ieee.org/abstract/document/8455742/
MOCA (Multi-attribute Ontology-based Criticality Analysis),,Ontologies,https://link.springer.com/article/10.1007/s43684-022-00021-7
Modal Relation Ontology (MRO),,Ontologies,https://www.spiedigitallibrary.org/conference-proceedings-of-spie/10635/106350H/Problems-with-prescriptions--disentangling-data-about-actual-versus-prescribed/10.1117/12.2307718.short?SSO=1
Mode of Delivery (MoD) Ontology,,Ontologies,https://wellcomeopenresearch.org/articles/5-125
Model Card Report Ontology (MCRO),,Ontologies,https://doi.org/10.1186/s12859-022-04797-6
Model for Clinical Information (MCI),,Ontologies,http://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-016-0248-9
Model for Describing Insect Anatomical Structures (MoDIAS),,Ontologies,https://www.preprints.org/manuscript/202201.0254/v1
Modular Environmental Modeling Ontology (MEMOn),,Ontologies,https://linkinghub.elsevier.com/retrieve/pii/S1364815218301221
Mouse Pathology Ontology (MPATH),,Ontologies,http://obofoundry.org/ontology/mpath.html
Name Reaction Ontology (RXNO),,Ontologies,http://obofoundry.org/ontology/rxno.html
Nanoparticle Ontology (NPO),: Ontology for Cancer Nanotechnology Research,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/20211274
Nanoparticles Impact on Human Cell morphology Ontology (NIHCO),,Ontologies,https://www.bjbabe.ro/wp-content/uploads/2017/10/18_RODINO.pdf
Neomark Oral Cancer Ontology (NEOMARK4),,Ontologies,https://bioportal.bioontology.org/ontologies/NEOMARK4
Neural Electromagnetic Ontologies (NEMO),: Ontology-based Tools for Representation and Integration of Event-related Brain Potentials,Ontologies,https://www.nitrc.org/projects/nemo
NeuroPsychological Testing Ontology (NPT),,Ontologies,http://www.unbsj.ca/sase/csas/data/ws/icbo2013/papers/research/icbo2013_submission_31.pdf
Neuroscience Information Framework,(see also [here](http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381282)  ),Ontologies,http://www.neuinfo.org/
Next-Generation Biobanking Ontology (NGBO),,Ontologies,http://ceur-ws.org/Vol-2180/paper-02.pdf
NMR-Instrument Component of Metabolomics Investigations Ontology,,Ontologies,http://bioportal.bioontology.org/ontologies/NMR?p=classes&conceptid=root
Non-Coding RNA Ontology (NCRO),,Ontologies,http://soc.southalabama.edu/~huang/papers/BIBM-15-1.pdf
OBDMR: An Ontology-Based Data Model for Railways,,Ontologies,https://doi.org/10.1166/jctn.2020.8662
OBR Scolio (scoliosis) ontology,,Ontologies,https://www.sciencedirect.com/science/article/pii/S0169260719300665
Ocular Disease Ontology (ODO),,Ontologies,http://www.unbsj.ca/sase/csas/data/ws/icbo2013/papers/posters/icbo2013_submission_67.pdf
Ocular Immune-Mediated Inflammatory Diseases Ontology (OcIMIDo),,Ontologies,https://www.sciencedirect.com/science/article/pii/S001048252100336X
OncoCL-KB,: Knowledgebase for Integration of Clinical and Molecular Cancer Data,Ontologies,http://ceur-ws.org/Vol-1546/poster_65.pdf
OntoAlign++,: A Combined Strategy for Improving Ontologies Alignment,Ontologies,http://ceur-ws.org/Vol-1041/ontobras-2013_paper52.pdf
OntoDM Core,,Ontologies,https://www.researchgate.net/publication/271952542_Ontology_of_core_data_mining_entities
OntoForInfoScience,,Ontologies,http://www2.marilia.unesp.br/revistas/index.php/bjis/article/viewFile/5426/3970
Ontologies for Representing Surgical Procedure Models (OntoSPM),,Ontologies,https://ontospm.univ-rennes1.fr/doku.php?id=ontology
Ontologized Minimum Information About BIobank data Sharing (OMIABIS),,Ontologies,http://obofoundry.org/ontology/omiabis.html
Ontology Based Clinical Decision Support System for Geriatrics,,Ontologies,https://www.ingentaconnect.com/contentone/asp/jctn/2020/00000017/00000001/art00042
Ontology Based Decision Support System for Tuberculosis Management and Control,,Ontologies,https://www.researchgate.net/publication/312296048
Ontology for Adverse Events (OAE),,Ontologies,http://obofoundry.org/ontology/oae.html
Ontology for Autism Spectrum Disorder,,Ontologies,http://www.sciencedirect.com/science/article/pii/S1532046415001367
Ontology for Biobanking (OBIB),,Ontologies,http://obofoundry.org/ontology/obib.html
Ontology for Biomedical Investigations (OBI),,Ontologies,http://obofoundry.org/ontology/obi.html
Ontology for Cancer research variables (OCRV),,Ontologies,https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-018-0636-4
Ontology for Computable Eligibility Criteria - Hepatitis C Virus (OCEC-HCV),,Ontologies,https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6371316/
Ontology for Dengue Fever (IDODEN),,Ontologies,http://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0003479
Ontology for Documentation of Variable/Data Source Selection (ODVDS),,Ontologies,http://ceur-ws.org/Vol-2427/SEPDA_2019_paper_15.pdf
Ontology for the Documentation of Variable Selection and Data source Selection and Integration (OD-ATTEST),,Ontologies,https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-020-01270-3
Ontology for Drug Discovery Investigations (DDI),,Ontologies,https://code.google.com/archive/p/ddi-ontology/
Ontology for Energy Investigations (OEI),,Ontologies,https://www.researchgate.net/publication/234128482_Facilitating_Knowledge_Sharing_and_Analysis_in_Energy_Informatics_with_the_Ontology_for_Energy_Investigations_%28OEI%29
Ontology for Functionally Graded Materials (OFGM),,Ontologies,https://www.academia.edu/27922525/Development_of_a_Manufacturing_Ontology_for_Functionally_Graded_Materials
Ontology for General Medical Science (OGMS),,Ontologies,http://obofoundry.org/ontology/ogms.html
Ontology for Genes and Genomes - Mouse (OGG-MM),,Ontologies,http://www.ontobee.org/ontology/OGG-Mm
Ontology for Genetic Interval (OGI),,Ontologies,http://bioportal.bioontology.org/ontologies/OGI?p=classes&conceptid=root
Ontology for Guiding Appropriate Antibiotic Prescribing,,Ontologies,http://www.sciencedirect.com/science/article/pii/S1532046411001675
Ontology for Information Science (OntoforInforScience),,Ontologies,https://www.researchgate.net/publication/299534658_OntoforInfoScience_a_detailed_methodology_for_construction_of_ontologies_and_its_application_in_the_blood_domain
Ontology for Laparoscopic Surgeries (LapOntoSPM),,Ontologies,http://link.springer.com/article/10.1007/s11548-015-1222-1
Ontology for MIcroRNA Target Prediction (OMIT),( [here](https://pdfs.semanticscholar.org/a4d7/a797ab006aceb72ec52587c815c30c800de5.pdf)  ),Ontologies,http://obofoundry.org/ontology/omit.html
Ontology for Newborn Screening and Translational Research (ONSTR),,Ontologies,https://www.researchgate.net/publication/256648393_%27ONSTR_The_Ontology_for_Newborn_Screening_Follow-up_and_Translational_Research%27
Ontology for Next Generation Sequencing Experiments (NGS Ontology),,Ontologies,https://github.com/lindenb/ngs-ontology
Ontology for Nutritional Epidemiology (ONE),,Ontologies,https://obofoundry.org/ontology/one.html
Ontology for Nutritional Studies (ONS),,Ontologies,https://genesandnutrition.biomedcentral.com/articles/10.1186/s12263-018-0601-y
"Ontology for Pain and Related Disability, Mental Health and Quality of Life (OPMQoL)",,Ontologies,http://www.referent-tracking.com/RTU/?page=projects.phtml#opmqol
Ontology for Parasite LifeCycle (OPL),,Ontologies,http://obofoundry.org/ontology/opl.html
Ontology for Periodontitis (PERIO),,Ontologies,http://www.jbiomedsem.com/content/6/1/30
Ontology for Stem Cell Investigations (OSCI),,Ontologies,https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2723-7
Ontology for Thoracentesis,,Ontologies,https://www.sciencedirect.com/science/article/pii/S0933365717301525
Ontology of Arthropod Circulatory Systems (OArCS),,Ontologies,http://obofoundry.org/ontology/oarcs.html
Ontology of Biological and Clinical Statistics (OBCS),,Ontologies,http://obofoundry.org/ontology/obcs.html
Ontology of Cancer Related Social-Ecological Variables (OCRSEV),,Ontologies,http://ceur-ws.org/Vol-2137/ws_ONCONTO_paper_3.pdf
Ontology of Card Sleights,,Ontologies,https://arxiv.org/abs/1903.08523
Ontology of Cardiovascular Drug Adverse Events (OCVDAE),,Ontologies,https://www.nature.com/articles/s41598-017-12580-4
Ontology of Chinese Medicine for Rheumatism (OCMR),,Ontologies,https://bioportal.bioontology.org/ontologies/OCMR
Ontology of Clinical Research (OCRe),,Ontologies,https://ce.google.com/archive/p/ontology-of-clinical-research/
Ontology of Commercial Exchange (OCE),,Ontologies,https://philarchive.org/archive/MERCCC
Ontology of Data Mining (OntoDM),,Ontologies,https://doi.org/10.1109/ICDMW.2008.62
Ontology of Datatypes (OntoDT),,Ontologies,https://www.sciencedirect.com/science/article/pii/S0020025515005800
Ontology of Electronics (OOE),,Ontologies,https://github.com/ontology-of-electronics
Ontology of Experimental Variables and Values (OOEVV),,Ontologies,https://bioportal.bioontology.org/ontologies/OOEVV
Ontology of Genes and Genomes (OGG),,Ontologies,http://obofoundry.org/ontology/ogg.html
Ontology of Genetic Disease Investigations (OGDI),,Ontologies,https://bioportal.bioontology.org/ontologies/OGDI
Ontology of Genetic Susceptibility Factor (OGSF),,Ontologies,http://obofoundry.org/ontology/ogsf.html
Ontology of Hemotherapy (HEMONTO),,Ontologies,https://1library.net/document/q5946wgz-hemocomponents-hemoderivatives-ontology-hemonto-ontology-blood-components.html
Ontology of Medical Microbiology (OntoMic),,Ontologies,http://rali.iro.umontreal.ca/rali/sites/default/files/publis/Levreault-MSc.pdf
Ontology of Medically Related Social Entities (OMRSE),,Ontologies,http://obofoundry.org/ontology/omrse.html
Ontology of Microbial Phenotypes (OMP),,Ontologies,http://obofoundry.org/ontology/omp.html
Ontology of Organizational Structures of Trauma systems and Trauma centers (OOSTT),,Ontologies,http://ceur-ws.org/Vol-1747/IT504_ICBO2016.pdf
Ontology of Phenomenological Psychopathology (OPheP),,Ontologies,https://doi.org/10.1016/S2215-0366(22)00156-0
Ontology of Social Participation (OPS),,Ontologies,http://arxiv.org/pdf/1501.02662.pdf
Ontology of Systems Engineering,,Ontologies,https://www.sciencedirect.com/science/article/pii/S1877050919307380
Ontology of Vaccine Adverse Events (OVAE),,Ontologies,http://obofoundry.org/ontology/ovae.html
Ontology-Based Data Access (OBDA),,Ontologies,http://www.sciencedirect.com.gate.lib.buffalo.edu/science/article/pii/S1570826815000165
Ontology-Based eXtensible Data Model (OBX),,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/20460173
Ontology-Based Operational Emergency Response (POLARISC),,Ontologies,https://onlinelibrary.wiley.com/doi/pdf/10.1002/9781119564034.ch52
Ontology-Driven Information System (ODIS)/Ontology-Driven Scenario Generator (ODSG),,Ontologies,http://www.sciencedirect.com/science/article/pii/S0952197615000913
Open Model-Based Engineering Environment (OpenMBEE),,Ontologies,https://link.springer.com/chapter/10.1007/978-3-030-82083-1_56
Operational Environment Ontology (OEO),,Ontologies,https://jsou.libguides.com/ld.php?content_id=37534351
Oral Health and Disease Ontology (OHD),,Ontologies,http://obofoundry.org/ontology/ohd.html
Organization Ontology Based on ROR,,Ontologies,https://figshare.com/articles/presentation/An_Organization_Ontology_based_on_ROR/14839359
ORMA+ Ontology for Reliability Centered Maintenance,,Ontologies,https://www.politesi.polimi.it/bitstream/10589/195722/3/2022_10_Ghedini.pdf
Parasite Experiment Ontology (PEO),,Ontologies,http://bioportal.bioontology.org/ontologies/1335
Part-Focused Manufacturing Process Ontology (PMPO),,Ontologies,https://www.tandfonline.com/doi/abs/10.1080/0951192X.2017.1357837
Patient Safetry Categorial Structure (PS-CAST),,Ontologies,http://person.hst.aau.dk/ska/MIE2015/Papers/SHTI210-0160.pdf
Performance Summary Display Ontology (PSDO),,Ontologies,https://github.com/Display-Lab/psdo
Petrochemical Ontology,,Ontologies,http://books.google.com/books?id=XYOBAusxPCcC&pg=PA27&lpg=PA27&dq=bfo+ontology&source=bl&ots=4nFYXvfaMy&sig=xq4BZAmY8DH0J5DMj3DE_xB4Fes&hl=en&ei=ZFpjStvADMaltgem27SyAg&sa=X&oi=book_result&ct=result&resnum=2
PGxO Pharmacogenomics Ontology,,Ontologies,https://www.biorxiv.org/content/biorxiv/early/2018/08/13/390971.full.pdf
Phenotypic Quality Ontology (PaTO),: qualities of biomedical entities,Ontologies,http://obofoundry.org/ontology/pato.html
Photovoltaic Ontology (PVO),,Ontologies,https://doi.org/10.1109/SEGE55279.2022.9889768
Physics-Based Simulation Ontology (PSO-Physics and PSO-Sim),,Ontologies,https://www.tandfonline.com/doi/abs/10.1080/09544828.2019.1644301?journalCode=cjen20
Plant Experimental Assay Ontology (PEAO),,Ontologies,http://bioportal.bioontology.org/ontologies/PEAO
Plant Ontology (PO),,Ontologies,http://obofoundry.org/ontology/po.html
Plastic Rock Deformation (PRD) ontology,,Ontologies,https://www-sciencedirect-com.gate.lib.buffalo.edu/science/article/pii/S0098300416308482
Pneumonia Ontology,,Ontologies,https://www.researchgate.net/profile/Sabrina_Azzi/publication/328171801_Design_of_a_Pneumonia_Ontology_for_Diagnosis_Decision_Support_System/links/5bbcb970299bf1049b785032/Design-of-a-Pneumonia-Ontology-for-Diagnosis-Decision-Support-System.pdf
POLARISC Emergency Response System Ontology,,Ontologies,https://www.researchgate.net/publication/332810691
Ponte Ontology Platform (PONTE),,Ontologies,https://www.sciencedirect.com/science/article/pii/S1569190X18301114
Population and Community Ontology (PCO),,Ontologies,http://obofoundry.org/ontology/pco.html
Population Health Record (PopHR),,Ontologies,http://onlinelibrary.wiley.com/doi/10.1111/nyas.13271/full
Porifera Ontology (PORO),,Ontologies,http://obofoundry.org/ontology/poro.html
Pre-Eclampsia Ontology (PEO),,Ontologies,http://journals.plos.org/plosone/article%3Fid%3D10.1371/journal.pone.0162828
Precision Medicine Ontology (PMO),,Ontologies,http://www.aimspress.com/fileOther/PDF/MBE/mbe-17-04-227.pdf
PreOptique Platform for Integrated Pre-surgery Reports,,Ontologies,https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-019-0197-1
Prescription of Drugs Ontology (PRDO),,Ontologies,https://pdfs.semanticscholar.org/7100/59ad86c5c2ef7a5b1430d30a8950a88aa319.pdf
PRISM: A Platform for Imaging inPrecision Medicine,,Ontologies,https://ascopubs.org/doi/pdfdirect/10.1200/CCI.20.00001
Process and Observation Ontology (PO2),,Ontologies,https://www.sciencedirect.com/science/article/abs/pii/S0958694619300032
Product Life Cycle Ontology for Additive Manufacturing,,Ontologies,https://www.sciencedirect.com/science/article/pii/S0166361518301647
Product Service System (PSS) Ontology,,Ontologies,https://www.sciencedirect.com/science/article/abs/pii/S0166361522001269?via%3Dihub
Proper Name Ontology (PNO),,Ontologies,https://code.google.com/p/proper-name-ontology
PROSPECT-IDR: Personalised Prediction of Infectious Disease Risk,,Ontologies,http://www.tara.tcd.ie/bitstream/handle/2262/86059/Final%20Version.pdf?sequence=1
Protein Ontology (PRO),: protein types and modifications classified on the basis of evolutionary relationships,Ontologies,http://obofoundry.org/ontology/pr.html
Protein-Ligand Interaction Ontology (PLIO),,Ontologies,http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3106195
Provenir ontology for provenance modeling,,Ontologies,https://corescholar.libraries.wright.edu/cgi/viewcontent.cgi?article=1079&context=knoesis
Public Safety and Emergency Management (PS/EM) Communications Ontology,,Ontologies,https://www.ida.org/-/media/feature/publications/p/pu/public-safety-and-emergency-management-communications-ontology/d-8583.ashx
QROWD urban traffic and mobility ontology,,Ontologies,https://ec.europa.eu/research/participants/documents/downloadPublic?documentIds=080166e5c077764d&appId=PPGMS
Quality of Service (QoS) Ontology,,Ontologies,https://www.researchgate.net/publication/259759470
Rare-Earth Elements (REE) Mineral System ontology,,Ontologies,https://doi.org/10.1130/2022.2558(03)
Reference Ontology for FISH (FAIR in vivo data Sharing platform),,Ontologies,http://ceur-ws.org/Vol-3235/paper25.pdf
Relations Ontology (RO),,Ontologies,http://www.obofoundry.org/ontology/ro.html
Reliability Assessment for Assembly Stations (RAAS) Ontology,,Ontologies,https://infoscience.epfl.ch/record/265908/files/
Rescue Ontology (ResOnt),,Ontologies,https://www.researchgate.net/profile/Samer-Chehade-2/publication/353571839
RFID System Configuration Ontology (RFID SCO),,Ontologies,https://doi.org/10.1017/S0269888921000096
RNA Ontology (RnaO),": RNA features, interactions and motifs",Ontologies,http://obofoundry.org/ontology/rnao.html
Rock Plastic Deformation (RPD) ontology,,Ontologies,http://www.sciencedirect.com/science/article/pii/S0098300416308482
Role Ontology (ROLEO),,Ontologies,https://bioportal.bioontology.org/ontologies/ROLEO
ROMAIN industrial maintenance ontology,,Ontologies,https://www.researchgate.net/publication/332390146_ROMAIN_Towards_a_BFO_compliant_reference_ontology_for_industrial_maintenance
Saliva Ontology (SALO),,Ontologies,https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-11-302
Schistosomiasis Process Ontology (IDOSCHISTO),,Ontologies,http://ceur-ws.org/Vol-1747/IP01_ICBO2016.pdf
Scientific Evidence and Provenance Information Ontology (SEPIO),,Ontologies,http://ceur-ws.org/Vol-1747/IT605_ICBO2016.pdf
Sefaria Topics,,Ontologies,https://github.com/Sefaria/Sefaria-Project/wiki/Documentation-for-Topics-Hierarchy
Semantic Electronic Health Record (SEHR) Model,from [Linked2Safety](http://www.linked2safety-project.eu/)  (see also [here](https://link.springer.com/article/10.1007/s12553-017-0188-0)  ),Ontologies,http://www.linked2safety-project.eu/node/44
Semantic LAminated Composites Knowledge management System (SLACKS),,Ontologies,http://dl.acm.org/citation.cfm?id=2580238
Semantic Reference Model for Individualization of Information Processes,,Ontologies,https://www.mdpi.com/2079-9292/10/20/2523
Semantic Systems Engineering Ontology (SESO),,Ontologies,https://indico.esa.int/event/386/contributions/6243/attachments/4281/6391/1435%20-%20using%20semantic%20systems%20engineering%20techniques%20to%20verify%20the%20large%20aperture%20space%20telescope%20mission%20%E2%80%93%20current%20status.pdf
Semanticscience Integrated Ontology (SIO),,Ontologies,https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-14
Senselab Ontology,with applications to [NeuronDB](http://senselab.med.yale.edu/neurondb/)  and [BrainPharm](https://groups.google.com/forum/#!topic/bfo-discuss/q0E1J27QvtI) ,Ontologies,http://www.ncbi.nlm.nih.gov/pubmed/20006477
Sentinel: Platform for Semantic Enrichment of Media Streams,,Ontologies,http://ieeexplore.ieee.org/document/8232468/
Sequence Ontology (SO),: features and properties of nucleic sequences,Ontologies,http://obofoundry.org/ontology/so.html
Shop-Floor Digital Twin (DT) ontology,,Ontologies,http://ceur-ws.org/Vol-2615/paper5.pdf
Situated and Interactive Multimodal Conversations,,Ontologies,https://arxiv.org/pdf/2006.01460.pdf
Situation Awareness Ontology (SAO),,Ontologies,http://link.springer.com/article/10.1007/s10489-016-0834-7
Sketch Map Ontology,,Ontologies,https://www.tandfonline.com/doi/abs/10.1080/13658816.2017.1309043?journalCode=tgis20
Skin Physiology Ontology (SPO),,Ontologies,https://bioportal.bioontology.org/ontologies/SPO
Sleep Domain Ontology (SDO),,Ontologies,https://bioportal.bioontology.org/ontologies/SDO
SMART Protocols,: SeMAntic RepresenTation for Experimental Protocols,Ontologies,http://vocab.linkeddata.es/SMARTProtocols
Smart Ultrasound in Obstetrics and Gynecology (SUOG) Ontology,,Ontologies,https://icbo2021.inf.unibz.it/wp-content/uploads/2021/09/169_S1_ElGhosh_paper_8.pdf
SNOMED CT (SCT) Standard Ontology,,Ontologies,https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-018-0651-5
Social Psychology Ontology (SPO),,Ontologies,https://ubir.buffalo.edu/xmlui/handle/10477/79440
Software Ontology (SWO),,Ontologies,http://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-5-25
"Software, Disabilities and Competences Ontology (SODIC)",,Ontologies,http://dspace.ucuenca.edu.ec/bitstream/123456789/28548/1/Trabajo%20de%20Titulaci%C3%B3n.pdf
Soil Food Web Ontology,,Ontologies,https://www.biorxiv.org/content/10.1101/2023.02.03.526812v1.full.pdf
Space Domain Ontologies (SDO),,Ontologies,https://philpapers.org/rec/COXTSD-2
Space Object Ontology (SOO),,Ontologies,https://ieeexplore.ieee.org/document/7527882
Spatial Graph Adapter (SGA) Ontology Design Pattern,,Ontologies,http://www.semantic-web-journal.net/system/files/swj1582.pdf
Spatial Relation Ontology,,Ontologies,http://ceur-ws.org/Vol-2728/paper3.pdf
Spatiotemporal Ontology for the Administrative Units of Switzerland (SONADUS),,Ontologies,http://www.geo.uzh.ch/dam/jcr:6c3c9ef3-6bcd-4300-86e4-9de07d3f6f37/msc_felix_gantner_2011.pdf
Special Nuclear Materials Detection Ontology (SNM-DO),,Ontologies,http://ceur-ws.org/Vol-808/STIDS2011_CR_P2_WardEtAl.pdf
Statistics Ontology (STATO),,Ontologies,http://obofoundry.org/ontology/stato.html
STATO-LMM Linear Mixed Model Ontology,,Ontologies,https://www.nature.com/articles/s41597-020-0409-7
Subcellular Anatomy Ontology (SAO),,Ontologies,http://obofoundry.org/ontology/sao.html
Suggested Ontology for Pharmacogenomics (SO-Pharm),,Ontologies,http://obofoundry.org/ontology/sopharm.html
Supply Chain Traceability Ontology,,Ontologies,https://asmedigitalcollection.asme.org/computingengineering/article-abstract/22/5/051002/1139465/Enabling-Traceability-in-Agri-Food-Supply-Chains
Surface Water Ontology (SWO),,Ontologies,https://www.usgs.gov/media/files/surface-water-ontology
Survey Ontology,,Ontologies,https://www.scitepress.org/papers/2017/65827/65827.pdf
Sustainable Development and Climate (SDC) Ontology,,Ontologies,https://github.com/hbabaie1/Sustainable-Development-and-Climate-SDC-ontology
Symptomatic Treatment of Multiple Sclerosis Ontology (STMSO),,Ontologies,https://e-hir.org/upload/pdf/hir-2022-28-4-332.pdf
Taxonomy for Rehabilitation of Knee Conditions (TRAK),,Ontologies,http://users.cs.cf.ac.uk/I.Spasic/trak
The Common Rule Ontology (CRO),,Ontologies,https://github.com/CRO-ontology/CRO
The Trope Ontology,,Ontologies,https://www.mdpi.com/2409-9287/4/3/40
Time Event Ontology (TEO),,Ontologies,https://bioportal.bioontology.org/ontologies/TEO
Toxic Process Ontology (TXPO),,Ontologies,http://www.obofoundry.org/ontology/txpo.html
Trade-Space Analysis Tool for Constellations (TAT-C) ontology,,Ontologies,https://arc.aiaa.org/doi/abs/10.2514/6.2019-1032
Traditional Chinese Drugs Ontology (TCDO),,Ontologies,https://www.hindawi.com/journals/ecam/2021/6637810/
Translational Medicine Ontology (TMO),,Ontologies,http://esw.w3.org/topic/HCLSIG/PharmaOntology
Transportation System Ontology,,Ontologies,http://www.ontobee.org/ontology/TSO
Tumour-Node-Metastasis Ontology (TNM-O),,Ontologies,https://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0106-9
UMass Engineering Core Ontologies,,Ontologies,https://www.mdpi.com/2079-8954/6/4/46/pdf
United Nations SDG (Sustainable Development Goals) Ontology Framework,,Ontologies,https://iswc2017.ai.wu.ac.at/wp-content/uploads/papers/MainProceedings/179.pdf
United Nations System Document Ontology (ONTO-UNDO),,Ontologies,https://unsceb-hlcm.github.io/onto-undo/
Universal Core Semantic Layer,,Ontologies,http://sunsite.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-555/paper5.pdf
Vaccination Informed Consent Ontology (VICO),,Ontologies,http://jbiomedsem.biomedcentral.com/articles/10.1186/s13326-016-0062-4
Vaccine Ontology (VO),,Ontologies,http://obofoundry.org/ontology/vo.html
Value Stream Mapping (VSM) Ontology,,Ontologies,https://era.library.ualberta.ca/items/5ad997be-0f3d-4456-8108-b3c69d851a98/view/060e801a-92a5-44ac-ba8a-0a00ab22765e/Abdelghani_Mohammad_202101_PhD.pdf
Visual Inspection Ontology (VIO),,Ontologies,https://data.uni-hannover.de/dataset/visual-inspection-ontology
Visualized Emotion Ontology (VEO),,Ontologies,https://bmcmedinformdecismak.biomedcentral.com/articles/10.1186/s12911-018-0634-6
Vital Sign Ontology (VSO),,Ontologies,http://ontology.buffalo.edu/smith/articles/Vital_Sign_Ontology.pdf
VIVO Ontology,,Ontologies,https://openreview.net/forum?id=SkgyVa-coV
Volcanism Ontology (VO),,Ontologies,https://scholarworks.gsu.edu/cgi/viewcontent.cgi?article=1124&context=geosciences_theses
Volcanism Ontology (VO),,Ontologies,https://scholarworks.gsu.edu/cgi/viewcontent.cgi?article=1124&context=geosciences_theses
Xenopus Anatomy Ontology (XAO),,Ontologies,http://obofoundry.org/ontology/xao.html
Xenopus Phenotype Ontology (XPO),,Ontologies,https://www.biorxiv.org/content/biorxiv/early/2021/11/13/2021.11.12.467727.full.pdf
yOWL,: ontology-driven knowledge base for yeast biologists,Ontologies,http://www2007.org/workshops/paper_130.pdf
ZEMELA Intelligent Agriculture Platform,,Ontologies,https://ieeexplore.ieee.org/abstract/document/9627248
BioTopLite2,(See also [BioTopLite2 to BFO bridge](http://purl.org/biotop/btl2-bfo.owl)  ),BioTop,http://purl.org/biotop/btl2.owl
uc_Eating,": an ontology for the characterization of eating, drinking and otherwise consuming foods","International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",https://github.com/IC-FOODS/uc_Eating
uc_FoodDrugInteractionOntology,: an ontology for the characterization of interactions between foods and drugs,"International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",https://github.com/IC-FOODS/uc_FoodDrugInteractionOntology
uc_Milk,: an ontology for the characterization of mammalian milks,"International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",https://github.com/IC-FOODS/uc_Milk
uc_Processing,: an ontology for the characterization of processing methods and the products they engender,"International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",https://github.com/IC-FOODS/uc_Processing
uc_Sense,": an ontology for the characterization of sensory perception, qualities, and attributes","International Center for Food Ontology, Operability, Data and Semantics (IC-FOODS)",https://github.com/IC-FOODS/uc_Sense
Neuroscience Information Framework Cell Ontology (NIFCELL),,Neuroscience Information Framework,https://bioportal.bioontology.org/ontologies/NIFCELL
Neuroscience Information Framework Dysfunction Ontology (NIFDYS),,Neuroscience Information Framework,https://bioportal.bioontology.org/ontologies/NIFDYS
Neuroscience Information Framework Standard Ontology (NIFSTD),: a collection of OWL modules covering distinct domains of biomedical reality,Neuroscience Information Framework,http://bioportal.bioontology.org/ontologies/NIFSTD
"Air Force Research Laboratory, Rome, New York",,"Institutions, Groups and Projects",https://www.afrl.af.mil
Allotrope Foundation: Rethinking Scientific Data,,"Institutions, Groups and Projects",https://www.allotrope.org/
AstraZeneca,,"Institutions, Groups and Projects",http://www.astrazeneca.com/
Clinical Information Science,(see also [here](http://kerfors.blogspot.com) ),AstraZeneca,http://kerfors.blogspot.com
Autodesk,,"Institutions, Groups and Projects",https://www.autodesk.com/
"Bentley Software, Inc.",,"Institutions, Groups and Projects",
Berkeley Bioinformatics Open-Source Projects (BBOP),,"Institutions, Groups and Projects",http://berkeleybop.org/
Biomedical Knowledge Engineering Lab at Seoul National University (SNU BiKE),,"Institutions, Groups and Projects",http://bike.snu.ac.kr/
Brain Operation Database (BODB),,"Institutions, Groups and Projects",https://pubmed.ncbi.nlm.nih.gov/24234915/
Center for e-Design,,"Institutions, Groups and Projects",https://mie.umass.edu/e-design-center
CTSAconnect,,"Institutions, Groups and Projects",http://www.ctsaconnect.org/
CUBRC,,"Institutions, Groups and Projects",http://www.cubrc.org/index.php/data-science-and-information-fusion/ontology/'94
Darwin Core (DwC),(see also [here](http://www.standardsingenomics.com/content/pdf/1944-3277-9-17.pdf)  ),"Institutions, Groups and Projects",http://rs.tdwg.org/dwc
DOQS,: Data-Oriented Quality Solutions,"Institutions, Groups and Projects",http://www.doqs.com/
Division of Biomedical Ontology,at the [University at Buffalo Department of Biomedical Informatics](https://medicine.buffalo.edu/departments/biomedical-informatics.html),"Institutions, Groups and Projects",https://medicine.buffalo.edu/departments/biomedical-informatics/divisions/biomedical-ontology.html
DSpace at NTNUA,,"Institutions, Groups and Projects",http://rportal.lib.ntnu.edu.tw/
Dumontier Lab,,"Institutions, Groups and Projects",https://carleton.ca/biology/people/michel-dumontier/
eagle-i Research Resource Ontology,,"Institutions, Groups and Projects",http://obofoundry.org/ontology/ero.html
Ecole polytechnique federale de Lausanne (EPFL),,"Institutions, Groups and Projects",https://people.epfl.ch/cgi-bin/people?id=105551&lang=en&cvlang=en
Elsevier Smart Content Strategy,,"Institutions, Groups and Projects",http://www.elsevier.com/wps/find/authored_newsitem.cws_home/companynews05_01849
eNanoMapper,,"Institutions, Groups and Projects",http://www.enanomapper.net/
EuPath Ontology,,"Institutions, Groups and Projects",https://bioportal.bioontology.org/ontologies/EUPATH/?p=summary
Extensible Neuroimaging Archive Toolkit (XNAT),,"Institutions, Groups and Projects",http://www.aifb.kit.edu/images/e/e5/Sfb-infrastructure-spie2016.pdf
Department of Defence and Intelligence Community Ontology Working Group (DIOWG),,"Institutions, Groups and Projects,
Good Ontology Design (GoodOD),,"Institutions, Groups and Projects",https://doi.org/10.1371/journal.pone.0104463
HIGHFLEET,,"Institutions, Groups and Projects",http://www.highfleet.com/
Influenza Research Database (IRD),,"Institutions, Groups and Projects",http://www.fludb.org/brc/home.spg?decorator=influenza
INRIA Lorraine Research Unit,,"Institutions, Groups and Projects",https://www.inria.fr/en/centre-inria-nancy-grand-est
Institute for Defense Analysis,,"Institutions, Groups and Projects",http://www.ida.org/
Japan Advanced Institute of Science and Technology (JAIST),,"Institutions, Groups and Projects",http://www.jaist.ac.jp/ks/english/
Johns Hopkins University Applied Physics Lab,,"Institutions, Groups and Projects",http://www.jhuapl.edu/
"Kobe University, Graduate School of Medicine, Department of Sociomedical Informatics",,"Institutions, Groups and Projects",http://www.med.kobe-u.ac.jp/
L3 Data Tactics Corporation,(see also [here](http://ceur-ws.org/Vol-808/STIDS2011_CR_T1_SalmenEtAl.pdf)  ),"Institutions, Groups and Projects",https://www.data-tactics.com/
Language and Computing,   Bought by [Nuance](http://www.nuance.com/index.htm) ,"Institutions, Groups and Projects",http://www.landcglobal.com/
libryo,,"Institutions, Groups and Projects",https://libryo.com/
"Medical University Graz - Institute of Medical Informatics, Statistics and Documentation",,"Institutions, Groups and Projects",http://user.medunigraz.at/stefan.schulz
National Center for Multi-Source Information Fusion,,"Institutions, Groups and Projects",http://www.infofusion.buffalo.edu/
National Geospatial-Intelligence Agency (NGA),,"Institutions, Groups and Prjects",https://www.nga.mil/
OntoCAT,,"Institutions, Groups and Projects",http://www.ontocat.org/
OntoCOG,,"Institutions, Groups and Projects",http://ontobat.hegroup.org/
Open Access Journals Integrated service System Project (GoOA),,"Institutions, Groups and Projects",http://bioportal.bioontology.org/projects/PDOLAS
Open PHACTS,,"Institutions, Groups and Projects",http://www.openphacts.org/
openEHR,,"Institutions, Groups and Projects",http://www.openehr.org/wiki/display/ontol/Ontologies+Home
OSTHUS,,"Institutions, Groups and Projects",https://www.youtube.com/watch?v=WKuK2G-NUk8
Praxis,: EMR research on interoperability and query of clinical records,"Institutions, Groups and Projects",http://www.infor-med.com/downloads/articles_downloads/Praxis_EMR_SUNY_Interoperability_Project.pdf
REMINE,,"Institutions, Groups and Projects",https://pubmed.ncbi.nlm.nih.gov/21057717/
SAIC,,"Institutions, Groups and Projects",https://www.saic.com/
Saitama University - Faculty of Liberal Arts,(see also [here](http://www.kyy.saitama-u.ac.jp/~kachi/RealOnt.pdf)  ),"Institutions, Groups and Projects",http://www.saitama-u.ac.jp/
Science Applications International Corporation (SAIC),,"Institutions, Groups and Projects",https://www.saic.com/
Science Commons,,"Institutions, Groups and Projects",http://www.sciencecommons.org/
Neurocommons,,Science Commons,http://www.sciencecommons.org/projects/data/
Raytheon Technologies,,"Institutions, Groups and Projects",https://www.rtx.com/who-we-are/what-we-do/flight
Raytheon Technologies,,"Institutions, Groups and Projects",https://www.roche.com/
Securboration,,"Institutions, Groups and Projects",http://www.securboration.com/
Skeletome,,"Institutions, Groups and Projects",https://link.springer.com/content/pdf/10.1007/978-3-642-35173-0_6.pdf
SMART Protocols,,"Institutions, Groups and Projects",http://www.swat4ls.org/wp-content/uploads/2015/10/SWAT4LS_2015_paper_15.pdf
Thermo Fisher Scientific,,"Institutions, Groups and Projects",https://www.thermofisher.com/us/en/home.html
TRADOC Operational Environment Center,,"Institutions, Groups and Projects",http://basic-formal-ontology.org/www.tradoc.army.mil/g2/oetsc/videoTBOC_flv.aspx
U.S. Geological Survey (USGS) - Center of Excellence for Geospatial Information Science (CEGIS),,"Institutions, Groups and Projects",https://www.usgs.gov/search?keywords=ontology
"Biomedical Ontologies, University of Arkansas, Medical Center, Little Rock",,"Institutions, Groups and Projects",https://medicine.uams.edu/dbmi/research-labs/boar/
University of South Alabama - School of Computing - South Biomedical Informatics (SBI) Research Group,(see also [here](http://www.cis.usouthal.edu/~huang/papers/BIBM-13-1.pdf)  ),"Institutions, Groups and Projects",http://biomedical.cis.usouthal.edu/
University of Texas Southwestern Medical Center,(see also [here](http://profiles.utsouthwestern.edu/profile/120432/lindsay-cowell.html)  ),"Institutions, Groups and Projects",http://www.utsouthwestern.edu/
University of Washington - Structural Informatics Group (SIG),,"Institutions, Groups and Projects",http://sig.biostr.washington.edu/
Virus Pathogen Resource (ViPR),,"Institutions, Groups and Projects",https://www.viprbrc.org/brc/home.spg?decorator=vipr
VIVO,: An interdisciplinary national network enabling collaboration and discovery between scientists across all disciplines,"Institutions, Groups and Projects",http://vivoweb.org/
Volley: AI-powered learning hub,,"Institutions, Groups and Projects",http://volley.com/
University at Buffalo Referent Tracking Unit,,OntoCOG,http://www.referent-tracking.com/RTU/