diff --git a/README.md b/README.md index a93f67b..77e21eb 100644 --- a/README.md +++ b/README.md @@ -57,7 +57,7 @@ Running the following will create a project directory named 'fnb' relative to wh `fnbalign -n fnb -g example/mt4_chr1_2Mb.fa -1 example/mt4_chr1_raw_20x1.fq example/mt4_chr1_mut_20x1.fq -2 example/mt4_chr1_raw_20x2.fq example/mt4_chr1_mut_20x2.fq` -If the mutant pool sample is contaminated or users need to output all deletions with frequencies for their samples, please use option '-e' to output all deletions with reads in the deletion region for Step2 1.1. Data process for this option is a little slower. +If the mutant pool sample is contaminated or users need to output all deletions with frequencies for their samples, please use option '-e' to output all deletions with reads number in the deletion region for Step2 example 1.1. Data process for this option is a little slower. `fnbalign -n fnb -g example/mt4_chr1_2Mb.fa -1 example/mt4_chr1_raw_20x1.fq example/mt4_chr1_mut_20x1.fq -2 example/mt4_chr1_raw_20x2.fq example/mt4_chr1_mut_20x2.fq -e` ### Output: