DOC: scan area detector with motor(s) #115
Workflow file for this run
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| name: CI | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: # allow manual triggering | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| lint: | |
| name: Linting & Code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install package | |
| run: | | |
| set -vxeuo pipefail | |
| python -m pip install --upgrade pip | |
| - name: Run ruff | |
| uses: davidslusser/[email protected] | |
| with: | |
| python_version: "3.11" | |
| tests: | |
| name: CI py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| # - "3.12" # 2023-Q4 wait for upstreams to be ready | |
| max-parallel: 5 | |
| steps: | |
| - name: Set time zone | |
| run: echo "TZ=America/Chicago" >> "$GITHUB_ENV" | |
| - name: Checkout the project from GitHub | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Diagnostics | |
| run: | | |
| echo $(pwd) | |
| ls -lAFgh ./ | |
| echo "------------------" | |
| ls -lAFgh "$(pwd)/bluesky/" | |
| grep primary bluesky/user_group_permissions.yaml | |
| - name: Create Python ${{ matrix.python-version }} environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| cache-environment-key: env-key-${{ matrix.python-version }} | |
| # channel-priority: flexible | |
| environment-file: environment.yml | |
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
| create-args: >- | |
| coveralls | |
| pytest | |
| pytest-cov | |
| python=${{ matrix.python-version }} | |
| setuptools-scm | |
| - name: Initial Diagnostics | |
| run: | | |
| micromamba env list | |
| micromamba info | |
| micromamba list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Directories before Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Start EPICS IOCs in Docker | |
| run: | | |
| bash ./.github/scripts/iocmgr.sh start GP gp | |
| bash ./.github/scripts/iocmgr.sh start ADSIM ad | |
| docker ps -a | |
| ls -lAFgh /tmp/docker_ioc/iocad/ | |
| ls -lAFgh /tmp/docker_ioc/iocgp/ | |
| - name: Directories after Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Confirm EPICS is available with caget | |
| run: | | |
| which caget | |
| caget gp:UPTIME | |
| caget ad:cam1:Acquire_RBV | |
| - name: Confirm EPICS IOC is available via PyEpics | |
| run: | | |
| which python | |
| python -c "import epics; print(epics.caget('gp:UPTIME'))" | |
| - name: Confirm EPICS IOC is available via ophyd | |
| run: | | |
| CMD="import ophyd" | |
| CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | |
| CMD+="; up.wait_for_connection()" | |
| CMD+="; print(up.get())" | |
| python -c "${CMD}" | |
| - name: Install Redis & screen | |
| run: | | |
| sudo apt-get install redis screen | |
| - name: Run Bluesky queueserver | |
| run: | | |
| set -vxeuo pipefail | |
| conda env list | |
| pushd ./bluesky/ | |
| bash ./qserver.sh run & | |
| # bash ./qserver.sh start | |
| sleep 10 | |
| bash ./qserver.sh status | |
| qserver status | |
| popd | |
| - name: Run tests with pytest & coverage | |
| run: | | |
| set -vxeuo pipefail | |
| coverage run --concurrency=thread --parallel-mode -m pytest -vvv . | |
| coverage combine | |
| python -m coverage report --precision 3 | |
| - name: Force Install coveralls by pip | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --force-reinstall coveralls | |
| - name: Upload coverage data to coveralls.io | |
| shell: bash -l {0} | |
| run: | | |
| set -vxeuo pipefail | |
| python -m coveralls debug | |
| python -m coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
| coveralls: | |
| name: Report unit test coverage to coveralls | |
| needs: tests | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Gather coverage and report to Coveralls | |
| run: | | |
| set -vxeuo pipefail | |
| echo "Finally!" | |
| pip3 install --upgrade coveralls | |
| # debug mode: output prepared json and reported files list to stdout | |
| # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
| coveralls debug | |
| coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |