Show how to setup and use DM in a Bluesky session (#330) #150
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: # allow manual triggering | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| lint: | |
| name: Linting & Code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Install package | |
| run: | | |
| set -vxeuo pipefail | |
| python -m pip install --upgrade pip | |
| # 2024-09-20,prj: disable until code is compliant | |
| # - name: Run ruff | |
| # uses: davidslusser/[email protected] | |
| # with: | |
| # python_version: "3.11" | |
| tests: | |
| name: CI py${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| strategy: | |
| matrix: | |
| python-version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| # - "3.12" # 2023-Q4 wait for upstreams to be ready | |
| max-parallel: 5 | |
| steps: | |
| - name: Set time zone | |
| run: echo "TZ=America/Chicago" >> "$GITHUB_ENV" | |
| - name: Checkout the project from GitHub | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Diagnostics | |
| run: | | |
| echo $(pwd) | |
| ls -lAFgh ./ | |
| echo "------------------" | |
| ls -lAFgh "$(pwd)/bluesky/" | |
| grep primary bluesky/user_group_permissions.yaml | |
| - name: Create Python ${{ matrix.python-version }} environment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| cache-environment: true | |
| cache-environment-key: env-key-${{ matrix.python-version }} | |
| # channel-priority: flexible | |
| environment-file: environment.yml | |
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
| create-args: >- | |
| coveralls | |
| pytest | |
| pytest-cov | |
| python=${{ matrix.python-version }} | |
| setuptools-scm | |
| - name: Initial Diagnostics | |
| run: | | |
| micromamba env list | |
| micromamba info | |
| micromamba list | |
| conda config --show-sources | |
| conda config --show | |
| printenv | sort | |
| - name: Directories before Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Start EPICS IOCs in Docker | |
| run: | | |
| bash ./.github/scripts/iocmgr.sh start GP gp | |
| bash ./.github/scripts/iocmgr.sh start ADSIM ad | |
| docker ps -a | |
| ls -lAFgh /tmp/docker_ioc/iocad/ | |
| ls -lAFgh /tmp/docker_ioc/iocgp/ | |
| - name: Directories after Docker | |
| run: ls -lAFghrt ~/ | |
| - name: Confirm EPICS is available with caget | |
| run: | | |
| which caget | |
| caget gp:UPTIME | |
| caget ad:cam1:Acquire_RBV | |
| - name: Confirm EPICS IOC is available via PyEpics | |
| run: | | |
| which python | |
| python -c "import epics; print(epics.caget('gp:UPTIME'))" | |
| - name: Confirm EPICS IOC is available via ophyd | |
| run: | | |
| CMD="import ophyd" | |
| CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | |
| CMD+="; up.wait_for_connection()" | |
| CMD+="; print(up.get())" | |
| python -c "${CMD}" | |
| - name: Install Redis & screen | |
| run: | | |
| sudo apt-get install redis screen | |
| - name: Run Bluesky queueserver | |
| run: | | |
| set -vxeuo pipefail | |
| conda env list | |
| pushd ./bluesky/ | |
| bash ./qserver.sh run & | |
| # bash ./qserver.sh start | |
| sleep 10 | |
| bash ./qserver.sh status | |
| qserver status | |
| popd | |
| - name: Run tests with pytest & coverage | |
| run: | | |
| set -vxeuo pipefail | |
| coverage run --concurrency=thread --parallel-mode -m pytest -vvv . | |
| coverage combine | |
| python -m coverage report --precision 3 | |
| - name: Force Install coveralls by pip | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --force-reinstall coveralls | |
| - name: Upload coverage data to coveralls.io | |
| shell: bash -l {0} | |
| run: | | |
| set -vxeuo pipefail | |
| python -m coveralls debug | |
| python -m coveralls --service=github | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| COVERALLS_PARALLEL: true | |
| # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
| coveralls: | |
| name: Report unit test coverage to coveralls | |
| needs: tests | |
| runs-on: ubuntu-latest | |
| container: python:3-slim | |
| steps: | |
| - name: Gather coverage and report to Coveralls | |
| run: | | |
| set -vxeuo pipefail | |
| echo "Finally!" | |
| pip3 install --upgrade coveralls | |
| # debug mode: output prepared json and reported files list to stdout | |
| # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
| coveralls debug | |
| coveralls --service=github --finish | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |