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build-windows-executable-app.yaml
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name: Build executable for Windows
on:
push:
branches: [ "main" ]
pull_request:
branches: [ "main" ]
workflow_dispatch:
env:
OPENMS_VERSION: 3.2.0
# Define needed TOPP tools here
TOPP_TOOLS: "FeatureFinderMetabo FeatureLinkerUnlabeledKD SiriusExport"
jobs:
build-openms:
runs-on: windows-latest
steps:
- name: Checkout
uses: actions/checkout@v4
with:
repository: OpenMS/OpenMS
ref: release/${{ env.OPENMS_VERSION }}
path: 'OpenMS'
- name: Install Qt
uses: jurplel/install-qt-action@v4
with:
version: '5.15.2' # 5.12.7 is broken https://bugreports.qt.io/browse/QTBUG-81715, > 5.15.2 is not available on official archives (https://github.com/miurahr/aqtinstall/issues/636)
host: 'windows' # default: win64_msvc2017_64
target: 'desktop'
install-deps: 'true'
cache: 'false'
aqtversion: '==3.1.*'
# https://github.com/marketplace/actions/visual-studio-shell
- name: Set up Visual Studio shell
uses: egor-tensin/vs-shell@v2
with:
arch: x64
- name: Setup build tools
shell: bash
run: |
#choco install ccache ninja cmake
## GH CLI "SHOULD BE" installed. Sometimes I had to manually install nonetheless. Super weird.
# https://github.com/actions/runner-images/blob/main/images/win/scripts/Installers/Install-GitHub-CLI.ps1
# Update Chocolatey to the latest version
choco upgrade chocolatey -y
# Install compatible versions of tools
choco install ccache -y
choco install ninja -y
choco install cmake --version=3.31.0 -y
choco install cmake.install --version=3.31.0 -y
echo "C:/Program Files (x86)/GitHub CLI" >> $GITHUB_PATH
- name: Extract branch/PR infos
shell: bash
run: |
cd OpenMS
RUN_NAME_LOCAL=$(echo ${GITHUB_REF#refs/heads/} | tr / -)
echo "RUN_NAME=${RUN_NAME_LOCAL}" >> $GITHUB_ENV
echo "BASE_REF=$(gh pr view --json baseRefName -q .baseRefName || echo ${RUN_NAME_LOCAL})" >> $GITHUB_ENV
id: extract_branch
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
- name: Cache contrib
id: cache-contrib-win
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/OpenMS/contrib
key: ${{ runner.os }}-contrib3
- name: Load contrib build
if: steps.cache-contrib-win.outputs.cache-hit != 'true'
env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
run: |
cd OpenMS/contrib
# Download the file using the URL fetched from GitHub
gh release download -R OpenMS/contrib --pattern 'contrib_build-Windows.tar.gz'
# Extract the archive
7z x -so contrib_build-Windows.tar.gz | 7z x -si -ttar
rm contrib_build-Windows.tar.gz
ls
- name: Setup ccache cache
uses: actions/cache@v4
with:
path: .ccache
key: ${{ runner.os }}-ccache-${{ env.RUN_NAME }}-${{ github.run_number }}
# Restoring: From current branch, otherwise from base branch, otherwise from any branch.
restore-keys: |
${{ runner.os }}-ccache-${{ env.RUN_NAME }}
${{ runner.os }}-ccache-${{ env.BASE_REF }}
${{ runner.os }}-ccache-
- name: Add THIRDPARTY
shell: bash
run: |
# initialize THIRDPARTY
cd OpenMS
git submodule update --init THIRDPARTY
cd ..
# add third-party binaries to PATH
# use flat THIRDPARTY structure
mkdir -p _thirdparty
cp -R OpenMS/THIRDPARTY/Windows/64bit/* _thirdparty/
cp -R OpenMS/THIRDPARTY/All/* _thirdparty/
# add third-party binaries to PATH
for thirdpartytool in ${{ github.workspace }}/_thirdparty/*
do
echo $thirdpartytool >> $GITHUB_PATH
done
- name: Build Windows
shell: bash
run: |
mkdir $GITHUB_WORKSPACE/OpenMS/bld/
ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cibuild.cmake
env:
#OS_PREFIX_PATH: "${{ env.Qt5_DIR }}/lib/cmake;${{ env.Qt5_DIR }}"
OPENMS_CONTRIB_LIBS: "${{ github.workspace }}/OpenMS/contrib"
CI_PROVIDER: "GitHub-Actions"
CMAKE_GENERATOR: "Ninja"
SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS"
BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}"
ENABLE_STYLE_TESTING: "OFF"
ENABLE_TOPP_TESTING: "ON"
ENABLE_CLASS_TESTING: "ON"
WITH_GUI: "OFF"
ADDRESS_SANITIZER: "Off"
BUILD_TYPE: "Release"
OPENMP: "Off"
USE_STATIC_BOOST: "On"
# BUILD_FLAGS: "-p:CL_MPCount=2" # For VS Generator and MSBuild
BUILD_FLAGS: "-j2" # Ninja will otherwise use all cores (doesn't go well in GHA)
CMAKE_CCACHE_EXE: "ccache"
CCACHE_BASEDIR: ${{ github.workspace }}
CCACHE_DIR: ${{ github.workspace }}/.ccache
CCACHE_COMPRESS: true
CCACHE_COMPRESSLEVEL: 12
CCACHE_MAXSIZE: 400M
- name: Test Windows
shell: bash
run: ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/citest.cmake
env:
SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS"
CI_PROVIDER: "GitHub-Actions"
BUILD_NAME: "${{ env.RUN_NAME }}-Win64-class-topp-${{ github.run_number }}"
- name: Package
shell: bash
run: |
ctest --output-on-failure -V -S $GITHUB_WORKSPACE/OpenMS/tools/ci/cipackage.cmake
env:
SOURCE_DIRECTORY: "${{ github.workspace }}/OpenMS"
PACKAGE_TYPE: zip
SEARCH_ENGINES_DIRECTORY: "${{ github.workspace }}/_thirdparty"
CI_PROVIDER: "GitHub-Actions"
CPACK_PACKAGE_FILE_NAME: "openms-package"
- name: Upload package as artifact
uses: actions/upload-artifact@v4
with:
name: openms-package
path: ${{ github.workspace }}/OpenMS/bld/*.zip
build-executable:
runs-on: windows-latest
needs: build-openms
env:
PYTHON_VERSION: 3.11.0
APP_NAME: OpenMS-StreamlitTemplateApp
steps:
- name: Checkout
uses: actions/checkout@v4
- name: Download package as artifact
uses: actions/download-artifact@v4
with:
name: openms-package
path: openms-package
- name: Extract bin and share from package
run: |
cd openms-package
unzip "*.zip" -d .
cp -r openms-package/bin ../openms-bin
cp -r openms-package/share ../share
- name: Set up Python (regular distribution)
uses: actions/setup-python@v4
with:
python-version: ${{ env.PYTHON_VERSION }} # Use the same version as the embeddable version
- name: Setup python embeddable version
run: |
# Create a directory for the embeddable Python version
mkdir python-${{ env.PYTHON_VERSION }}
# Download and unzip the embeddable Python version
curl -O https://www.python.org/ftp/python/${{ env.PYTHON_VERSION }}/python-${{ env.PYTHON_VERSION }}-embed-amd64.zip
unzip python-${{ env.PYTHON_VERSION }}-embed-amd64.zip -d python-${{ env.PYTHON_VERSION }}
rm python-${{ env.PYTHON_VERSION }}-embed-amd64.zip
# Define paths for the regular Python distribution and the embeddable distribution
$PYTHON_DIR="${{ runner.tool_cache }}/Python/${{ env.PYTHON_VERSION }}/x64" # Path from actions/setup-python
$EMBED_DIR="python-${{ env.PYTHON_VERSION }}"
mkdir -p $EMBED_DIR/Lib/site-packages/tkinter
mkdir -p $EMBED_DIR/tcl
# Copy necessary Tkinter files from the regular Python distribution
cp -r $PYTHON_DIR/Lib/tkinter/* $EMBED_DIR/Lib/site-packages/tkinter/
cp -r $PYTHON_DIR/tcl/* $EMBED_DIR/tcl/
cp $PYTHON_DIR/DLLs/_tkinter.pyd $EMBED_DIR/
cp $PYTHON_DIR/DLLs/tcl86t.dll $EMBED_DIR/
cp $PYTHON_DIR/DLLs/tk86t.dll $EMBED_DIR/
- name: Install pip
run: |
curl -O https://bootstrap.pypa.io/get-pip.py
./python-${{ env.PYTHON_VERSION }}/python get-pip.py --no-warn-script-location
rm get-pip.py
- name: Uncomment 'import site' in python311._pth file
run: |
sed -i 's/#import site/import site/' python-${{ env.PYTHON_VERSION }}/python311._pth
- name: Install Required Packages
run: .\python-${{ env.PYTHON_VERSION }}\python -m pip install --force-reinstall -r requirements.txt --no-warn-script-location
- name: Set to offline deployment
run: |
$content = Get-Content -Raw settings.json | ConvertFrom-Json
$content.online_deployment = $false
$content | ConvertTo-Json -Depth 100 | Set-Content settings.json
- name: Create .bat file
run: |
echo ".\\python-${{ env.PYTHON_VERSION }}\\python -m streamlit run app.py local" > ${{ env.APP_NAME }}.bat
- name: Create All-in-one executable folder
run: |
mkdir streamlit_exe
mv python-${{ env.PYTHON_VERSION }} streamlit_exe
cp -r src streamlit_exe
cp -r content streamlit_exe
cp -r docs streamlit_exe
cp -r assets streamlit_exe
cp -r example-data streamlit_exe
cp openms-bin/*.dll streamlit_exe
cp -r .streamlit streamlit_exe
cp -r share streamlit_exe/share
cp app.py streamlit_exe
cp settings.json streamlit_exe
cp default-parameters.json streamlit_exe
cp ${{ env.APP_NAME }}.bat streamlit_exe
$files = $env:TOPP_TOOLS -split ' '
foreach ($file in $files) {
Copy-Item "openms-bin/${file}.exe" -Destination "streamlit_exe/${file}.exe"
}
- name: Generate Readme.txt
shell: bash
run: |
cat <<EOF > streamlit_exe/Readme.txt
Welcome to ${{ env.APP_NAME }} app!
To launch the application:
1. Navigate to the installation directory.
2. Double-click on the file: ${{ env.APP_NAME }}.bat or ${{ env.APP_NAME }} shortcut.
Additional Information:
- If multiple Streamlit apps are running, you can change the port in the .streamlit/config.toml file.
Example:
[server]
port = 8502
Reach out to us:
- Join our Discord server for support and community discussions: https://discord.com/invite/4TAGhqJ7s5
- Contribute or stay updated with the latest OpenMS web app developments on GitHub: https://github.com/OpenMS/streamlit-template
- Visit our website for more information: https://openms.de/
Thank you for using ${{ env.APP_NAME }}!
EOF
- name: Install WiX Toolset
run: |
curl -LO https://github.com/wixtoolset/wix3/releases/download/wix3111rtm/wix311-binaries.zip
unzip wix311-binaries.zip -d wix
rm wix311-binaries.zip
- name: Build .wxs for streamlit_exe folder
run: |
./wix/heat.exe dir streamlit_exe -gg -sfrag -sreg -srd -template component -cg StreamlitExeFiles -dr AppSubFolder -out streamlit_exe_files.wxs
- name: Prepare SourceDir
run: |
mkdir SourceDir
mv streamlit_exe/* SourceDir
cp assets/openms_license.rtf SourceDir
# Logo of app
cp assets/openms.ico SourceDir
- name: Generate WiX XML file
shell: bash
run: |
cat <<EOF > streamlit_exe.wxs
<?xml version="1.0"?>
<Wix xmlns="http://schemas.microsoft.com/wix/2006/wi">
<Product Id="8434b940-a943-40f1-ab1f-4db3feedb4ba" Name="${{ env.APP_NAME }}" Language="1033" Version="1.0.0.0" Codepage="1252" Manufacturer="OpenMS Developer Team" UpgradeCode="8d28e8c7-45dc-446c-b889-99a6aea2f1a5">
<Package Id="*" InstallerVersion="300" Compressed="yes" InstallPrivileges="elevated" Platform="x64" />
<Media Id="1" Cabinet="streamlit.cab" EmbedCab="yes" />
<!-- Folder structure -->
<Property Id="WIXUI_INSTALLDIR" Value="INSTALLFOLDER" />
<Directory Id="TARGETDIR" Name="SourceDir">
<Directory Id="ProgramFilesFolder">
<Directory Id="INSTALLFOLDER" Name="${{ env.APP_NAME }}">
<Directory Id="AppSubFolder" Name="${{ env.APP_NAME }}" />
<Component Id="CreateAppFolder" Guid="95dbfa06-d36a-427f-995c-e87769ac2e59">
<CreateFolder>
<Permission User="Everyone" GenericAll="yes" />
</CreateFolder>
</Component>
</Directory>
</Directory>
<Directory Id="DesktopFolder" />
</Directory>
<!-- Add components -->
<Feature Id="MainFeature" Title="Main Application" Level="1">
<ComponentGroupRef Id="StreamlitExeFiles" />
<ComponentRef Id="CreateAppFolder" />
<ComponentRef Id="DesktopShortcutComponent" />
<ComponentRef Id="InstallDirShortcutComponent" />
</Feature>
<!-- Create shortcut for running app on desktop -->
<Component Id="DesktopShortcutComponent" Guid="3597b243-9180-4d0b-b105-30d8b0d1a334" Directory="DesktopFolder">
<Shortcut Id="DesktopShortcut" Name="${{ env.APP_NAME }}" Description="Launch ${{ env.APP_NAME }}" Target="[AppSubFolder]${{ env.APP_NAME }}.bat" WorkingDirectory="AppSubFolder" Icon="AppIcon" />
<RegistryValue Root="HKCU" Key="Software\\OpenMS\\${{ env.APP_NAME }}" Name="DesktopShortcut" Type="integer" Value="1" KeyPath="yes" />
</Component>
<!-- Create shortcut for running app in installer folder -->
<Component Id="InstallDirShortcutComponent" Guid="c2df9472-3b45-4558-a56d-6034cf7c8b72" Directory="AppSubFolder">
<Shortcut Id="InstallDirShortcut" Name="${{ env.APP_NAME }}" Description="Launch ${{ env.APP_NAME }}" Target="[AppSubFolder]${{ env.APP_NAME }}.bat" WorkingDirectory="AppSubFolder" Icon="AppIcon" />
<RegistryValue Root="HKCU" Key="Software\\OpenMS\\${{ env.APP_NAME }}" Name="InstallFolderShortcut" Type="integer" Value="1" KeyPath="yes" />
</Component>
<!-- Provide icon here; it should exist in the SourceDir folder -->
<Icon Id="AppIcon" SourceFile="SourceDir/openms.ico" />
<!-- Run app directly after installation -->
<CustomAction Id="RunApp" Directory="AppSubFolder" Execute="deferred" Return="asyncNoWait" Impersonate="no"
ExeCommand="cmd.exe /c "[AppSubFolder]${{ env.APP_NAME }}.bat"" />
<!-- Add all Custom Actions -->
<InstallExecuteSequence>
<Custom Action="RunApp" Before="InstallFinalize">NOT REMOVE</Custom>
</InstallExecuteSequence>
<!-- Interface options -->
<UI>
<UIRef Id="WixUI_InstallDir" />
<UIRef Id="WixUI_ErrorProgressText" />
</UI>
<!-- Provide license; it should exist in the SourceDir folder -->
<WixVariable Id="WixUILicenseRtf" Value="SourceDir/openms_license.rtf" />
</Product>
</Wix>
EOF
- name: Build .wixobj file with candle.exe
run: |
./wix/candle.exe streamlit_exe.wxs streamlit_exe_files.wxs
- name: Link .wixobj file into .msi with light.exe
run: |
./wix/light.exe -ext WixUIExtension -sice:ICE60 -o ${{ env.APP_NAME }}.msi streamlit_exe_files.wixobj streamlit_exe.wixobj
- name: Archive build artifacts
uses: actions/upload-artifact@v4
with:
name: OpenMS-App
path: |
${{ env.APP_NAME }}.msi