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[continued from https://github.com/AllenNeuralDynamics/aind-ephys-preprocessing/issues/9]
Some checks in spikeinterface still appear to be incompatible with spikes from multiple recordings:
truncated output:
... POSTPROCESSING Found 1 json configurations Processing experiment1_Record Node 103#Neuropix-PXI-100.ProbeA-AP_recording Loading recording from binary JSON Number of original units: 318 -- Number of units after minimum spikes: 318 Extracting raw waveforms for deduplication Traceback (most recent call last): File "/tmp/nxf.3YDP1Mlxfq/capsule/code/run_capsule.py", line 215, in <module> we_raw = si.extract_waveforms( File "/opt/conda/lib/python3.9/site-packages/spikeinterface/core/waveform_extractor.py", line 1672, in extract_waveforms we = WaveformExtractor.create( File "/opt/conda/lib/python3.9/site-packages/spikeinterface/core/waveform_extractor.py", line 271, in create raise ValueError( ValueError: The sorting object has spikes exceeding the recording duration. You have to remove those spikes with the `spikeinterface.curation.remove_excess_spikes()` function ...
https://codeocean.allenneuraldynamics.org/data-assets/64dbcd9c-148a-4d6c-aba7-2bd54438eb96/ecephys_712141_2024-06-11_11-50-06_sorted_2024-07-19_01-52-51
The text was updated successfully, but these errors were encountered:
obs_intervals should also be included in the NWB units table to mark the sections between recordings (otherwise units will appear to have zero firing rate): https://pynwb.readthedocs.io/en/stable/pynwb.misc.html#pynwb.misc.Units
obs_intervals
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[continued from https://github.com/AllenNeuralDynamics/aind-ephys-preprocessing/issues/9]
Some checks in spikeinterface still appear to be incompatible with spikes from multiple recordings:
truncated output:
https://codeocean.allenneuraldynamics.org/data-assets/64dbcd9c-148a-4d6c-aba7-2bd54438eb96/ecephys_712141_2024-06-11_11-50-06_sorted_2024-07-19_01-52-51
The text was updated successfully, but these errors were encountered: