ResourceWarning: unclosed file <_io.TextIOWrapper name='./TopoStats-2024-07-04-18-25-53.log' mode='a' encoding='UTF-8'>

[ns-rse]

Seeing this exception/warning whenever running topostats <command> (including create-config)...

 ❱ topostats process -c config.yaml
Exception ignored in: <_io.FileIO name='/home/neil/work/git/hub/AFM-SPM/TopoStats/TopoStats-2024-07-04-18-25-53.log' mode='ab' closefd=True>
Traceback (most recent call last):
  File "/home/neil/work/git/hub/AFM-SPM/TopoStats/topostats/statistics.py", line 8, in <module>
    LOGGER = setup_logger(LOGGER_NAME)
             ^^^^^^^^^^^^^^^^^^^^^^^^^
ResourceWarning: unclosed file <_io.TextIOWrapper name='/home/neil/work/git/hub/AFM-SPM/TopoStats/TopoStats-2024-07-04-18-25-53.log' mode='a' encoding='UTF-8'>
Exception ignored in: <_io.FileIO name='/home/neil/work/git/hub/AFM-SPM/TopoStats/TopoStats-2024-07-04-18-25-53.log' mode='ab' closefd=True>
Traceback (most recent call last):
  File "/home/neil/work/git/hub/AFM-SPM/TopoStats/topostats/processing.py", line 31, in <module>
    LOGGER = setup_logger(LOGGER_NAME)
             ^^^^^^^^^^^^^^^^^^^^^^^^^
ResourceWarning: unclosed file <_io.TextIOWrapper name='/home/neil/work/git/hub/AFM-SPM/TopoStats/TopoStats-2024-07-04-18-25-53.log' mode='a' encoding='UTF-8'>

python --version

 ❱ python --version
Python 3.12.4

pip show topostats

 ❱ pip show topostats
Name: topostats
Version: 2.2.2.dev5+gf5b40f762
Summary: Automated Analysis for Atomic Force Microscopy Images of Biomolecules
Home-page: 
Author: 
Author-email: TopoStats Team <[email protected]>, Alice Pyne <[email protected]>, Sylvia Whittle <[email protected]>, Neil Shephard <[email protected]>, Max Gamill <[email protected]>, Jean Du <[email protected]>
License: GNU Lesser GPLv3 only
Location: /home/neil/.virtualenvs/topostats/lib/python3.12/site-packages
Editable project location: /home/neil/work/git/hub/AFM-SPM/TopoStats
Requires: AFMReader, h5py, igor2, matplotlib, numpy, pandas, pyfiglet, pySPM, pyyaml, ruamel.yaml, schema, scikit-image, scipy, seaborn, snoop, tifffile, tqdm
Required-by: 

## `pip freeze`

Not Applicable (I don't think) as this is an issue with `logging` which is a standard library.

[MaxGamill-Sheffield]

I think I fixed this in #976 which removes multiple loggers from being created :)