Yes of course you can :-). It is a very common use case we have.
- Download the CLI here.
- Mark the script as executed :
./datamaintain-cli --db-type $DB_TYPE --db-uri $MONGO_URI update-db --path $PATH --identifier-regex $REGEX --action MARK_AS_EXECUTED
An explanation about each CLI configuration key is provided here.
You can find samples here