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lammps.py

The first pass at trying to figure out what I was doing, it works but it uses ~34GB of ram

lammps2.py

A bit of a clean up, functionally identical to lampps.py but it uses way less ram. It has progress output in the terminal and outputs two text files called lower2middle.txt and lower2upper.txt

Things can be optimized a lot and could do with a whole refactor but that may be a while...